Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401912.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5013.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2064
ACGTcount: A:0.18, C:0.08, G:0.07, T:0.23

Warning! 914 characters in sequence are not A, C, G, or T


Found at i:131 original size:19 final size:19

Alignment explanation


    Indices: 109--145  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

         99 TTCCATTCAA

                               
        109 TTTTACTTAAATTTTTAAT
          1 TTTTACTTAAATTTTTAAT

                **            
        128 TTTTTTTTAAATTTTTAA
          1 TTTTACTTAAATTTTTAA

        146 GTTTCTCCAC


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   16  1.00

ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68


Consensus pattern (19 bp):   
TTTTACTTAAATTTTTAAT
Done.