Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401931.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5031.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 629

Length: 1049
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.43

Warning! 40 characters in sequence are not A, C, G, or T


Found at i:1024 original size:15 final size:16

Alignment explanation


    Indices: 993--1035  Score: 54
    Period size: 15  Copynumber: 2.7  Consensus size: 16

        983 TTTTTTTGTC

                              
        993 TTAACATTATAAAAATTA
          1 TTAAC-TTAT-AAAATTA

                            
       1011 -TAACTTATAAAATTA
          1 TTAACTTATAAAATTA

                       
       1026 TTAA-TTATAA
          1 TTAACTTATAA

       1036 TATATATATA


Statistics
Matches: 24,  Mismatches: 0, Indels: 5
        0.83            0.00        0.17

Matches are distributed among these distances:
  15   13  0.54
  16    7  0.29
  17    4  0.17

ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42


Consensus pattern (16 bp):   
TTAACTTATAAAATTA
Done.