Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401940.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_504.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37354

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9840--11074
172
7.2
171
79
5
1174
36
13
11
38
1.81
11318--11703
171
2.2
172
75
6
388
39
9
12
34
1.77
12263--12319
21
2.8
19
92
7
71
24
17
8
49
1.75
12269--12319
21
2.4
21
100
0
102
19
19
7
52
1.70
12643--12969
172
2.0
161
85
3
361
39
11
13
32
1.81
12422--12999
171
3.4
170
75
5
542
38
12
13
34
1.82
13597--13928
170
2.0
160
77
8
308
38
10
13
34
1.80
13767--14122
172
2.1
172
80
6
393
41
13
11
33
1.80
14316--15264
170
5.5
170
76
7
694
36
12
11
40
1.79
14316--15269
172
5.6
171
76
6
772
36
12
11
40
1.79
14446--15232
341
2.3
341
78
5
770
35
13
11
39
1.80
15604--17218
171
9.4
172
78
6
1431
35
13
11
38
1.82
15604--17249
172
9.6
172
78
5
1387
35
13
11
38
1.82
18875--20635
171
10.3
171
77
8
878
40
11
13
35
1.80
18875--21057
342
6.4
343
81
4
2144
39
11
13
35
1.80
18875--21056
512
4.3
509
79
5
1949
39
11
13
35
1.80
23458--24551
172
6.4
169
73
7
665
37
11
13
35
1.80
23779--24475
344
2.0
339
80
6
773
39
11
11
36
1.78
25434--25765
172
2.0
162
81
6
305
37
10
10
37
1.75
25646--25965
171
1.9
172
83
0
417
36
14
10
37
1.82
25699--26323
342
1.8
332
79
8
708
35
13
10
36
1.80
26491--26906
171
2.4
170
79
6
441
35
10
11
42
1.76

Tables:   1

The End!