Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397722.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1020.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 822

Length: 1370
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.29

Warning! 236 characters in sequence are not A, C, G, or T


Found at i:486 original size:170 final size:168

Alignment explanation


    Indices: 114--516  Score: 437
    Period size: 170  Copynumber: 2.4  Consensus size: 168

        104 NNNNNNNNNT

                                                     *                    * *
        114 GAGATTATAAAACTATTTAAAGAGAGTAATATTAGGCTTTTGAAGACTTGGGTGACTATAAAGGG
          1 GAGATTATAAAACTATTTAAAGAGAGTAATA--AGGCTTTTAAAG-CTTGGGTGACTATAAATGA

                     *   *                       *                      *    
        179 GCTTTTCTTGCCAGTGAATGGGTTTCCTCATGCTTCTTGAGGCAAACAATCAATTACAATTTGTG
         63 GCTTTTCTTACCAATGAATGGGTTTCCTCATGCTTCTCGAGGCAAACAATCAATTACAATCTGTG

                  *                *                *
        244 TTAACCGAAAATATAAAATAACTCAACTTCAAATCAATTAT
        128 TTAACCAAAAATATAAAATAACTAAACTTCAAATCAATTAG

                 **********    *                                             
        285 GAGATNNNNNNNNNNTTTACAGAGAGTAATAAGGCTTTTAAAGCTTGGGTGACTATAAATGAGCT
          1 GAGATTATAAAACTATTTAAAGAGAGTAATAAGGCTTTTAAAGCTTGGGTGACTATAAATGAGCT

                                *    * **                  *       *         
        350 TTTCTTACCAATGAATAGGTTTTTCTTTGTGCTTCTCGAGGCAAACATTCAATTATAATCTGTGT
         66 TTTCTTACCAATGAAT-GG-GTTTCCTCATGCTTCTCGAGGCAAACAATCAATTACAATCTGTGT

                                *    *  *           
        415 TAACCAAAAATATAAAATAATTAAATTTTAAATCAATTAG
        129 TAACCAAAAATATAAAATAACTAAACTTCAAATCAATTAG

                               *    *         *    *  *                   
        455 GAGATTATAAAACTATTTATAGAGTGTAATAAGGGTTTGGAAGGCTTGGGTGACTATAAATG
          1 GAGATTATAAAACTATTTAAAGAGAGTAATAAGGCTTT-TAAAGCTTGGGTGACTATAAATG

        517 GNNNNNNNNN


Statistics
Matches: 184,  Mismatches: 45, Indels: 6
        0.78            0.19        0.03

Matches are distributed among these distances:
 168   34  0.18
 169   13  0.07
 170   96  0.52
 171   41  0.22

ACGTcount: A:0.35, C:0.11, G:0.18, T:0.33


Consensus pattern (168 bp):   
GAGATTATAAAACTATTTAAAGAGAGTAATAAGGCTTTTAAAGCTTGGGTGACTATAAATGAGCT
TTTCTTACCAATGAATGGGTTTCCTCATGCTTCTCGAGGCAAACAATCAATTACAATCTGTGTTA
ACCAAAAATATAAAATAACTAAACTTCAAATCAATTAG
Done.