Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401943.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5042.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 717

Length: 1195
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.36

Warning! 81 characters in sequence are not A, C, G, or T


Found at i:793 original size:171 final size:163

Alignment explanation


    Indices: 569--884  Score: 295
    Period size: 173  Copynumber: 1.9  Consensus size: 163

        559 TTTTTACATA

                *                  *       *              *         *        
        569 TTTTGTTAAAACATAATATAATTGAATGTCTTCTTTAAAAAACGTATAG-AAAAACCCATTCATT
          1 TTTTTTTAAAACATAATATAATTAAATGTCTGCTTTAAAAAACGTAAAGAAAAAACACATTCATT

                                                           *                 
        633 GAG-AAAAAAAGTCCATTTATAGTGACCCATT-CACTCAAAAGCCT-TATTACT-TGCTTTAAAT
         66 -AGTAAAAAAAGTCCATTTATAGTGACCCATTCCA-TCAAAAG-CTAAATTACTCT-CTTTAAAT

                                                 
        694 -GGTTTATAATCTCATAATTGATTTTAGGTTCAATTT
        127 AGGTTTATAATCTCATAATTGATTTTAGGTTCAATTT

                                     *                     * *   *           
        730 TTTTTNNNNNNNNNNTTAAAACATATTATAATTAAATGTCTAGC-TTGAGAAATGTAAAGAAAAA
          1 TTTTT----------TTAAAACATAATATAATTAAATGTCT-GCTTTAAAAAACGTAAAG-AAAA

              * *            *                 *  *                          
        794 AATATATTCATTAGTAAGAAAAGTCCATTTATAGTTACTCATTCCATCAAAAGCTAAATTACTCT
         54 AACACATTCATTAGTAAAAAAAGTCCATTTATAGTGACCCATTCCATCAAAAGCTAAATTACTCT

                      *               
        859 CTTTAAATAGTTTTATAATCTCATAA
        119 CTTTAAATAGGTTTATAATCTCATAA

        885 NNNNNNNNNN


Statistics
Matches: 121,  Mismatches: 16, Indels: 23
        0.76            0.10        0.14

Matches are distributed among these distances:
 161    4  0.03
 171   35  0.29
 172    5  0.04
 173   58  0.48
 174   19  0.16

ACGTcount: A:0.38, C:0.13, G:0.09, T:0.37


Consensus pattern (163 bp):   
TTTTTTTAAAACATAATATAATTAAATGTCTGCTTTAAAAAACGTAAAGAAAAAACACATTCATT
AGTAAAAAAAGTCCATTTATAGTGACCCATTCCATCAAAAGCTAAATTACTCTCTTTAAATAGGT
TTATAATCTCATAATTGATTTTAGGTTCAATTT
Done.