Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018401946.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5045.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696
Length: 1161
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.24
Warning! 399 characters in sequence are not A, C, G, or T
Found at i:652 original size:172 final size:172
Alignment explanation
Indices: 329--662 Score: 427
Period size: 172 Copynumber: 1.9 Consensus size: 172
319 TTCAGAAGCC
* * * *
329 TTATAACTCACTTTAAATGGTTTTTTAATCTCAAAATTGATTTAAATTTGACCTCTTTGTACATT
1 TTATAACTCACTTTAAATGCTTTTATAATCTCAAAATTAATTTAAATTTGACATCTTTGTACATT
394 TCTGGTTAAACCAGAAAAGGATTGAATATCTACCTTCAGAAACATGAAGAGCAAAGTATTCATTT
66 TCTGGTTAAACCAGAAAAGGATTGAATATCTACCTTCAGAAACATGAAGAGCAAAGTATTCATTT
**********
459 GCAAGNNNNNNNNNNTTATAGTCACCCATTCATTCAAGAGCA
131 GCAAGAATAGTCCATTTATAGTCACCCATTCATTCAAGAGCA
* * * * * *
501 TTATTACTCAGTTTAAATGCTTTTATAATCTTAAAATTAATTTCAATTTGA-ATGTTTTGTGCAT
1 TTATAACTCACTTTAAATGCTTTTATAATCTCAAAATTAATTTAAATTTGACAT-CTTTGTACAT
* * * * *
565 TTTTGGTTAAACTAGAAGAGGATTGAATATCTACCTTTAGAAATATGAAGAGCAAAGTATTCATT
65 TTCTGGTTAAACCAGAAAAGGATTGAATATCTACCTTCAGAAACATGAAGAGCAAAGTATTCATT
630 TGCAAGAATAGTCCATTTATAGTCACCCATTCA
130 TGCAAGAATAGTCCATTTATAGTCACCCATTCA
663 NNNNNNNNNN
Statistics
Matches: 136, Mismatches: 25, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
171 1 0.01
172 135 0.99
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.36
Consensus pattern (172 bp):
TTATAACTCACTTTAAATGCTTTTATAATCTCAAAATTAATTTAAATTTGACATCTTTGTACATT
TCTGGTTAAACCAGAAAAGGATTGAATATCTACCTTCAGAAACATGAAGAGCAAAGTATTCATTT
GCAAGAATAGTCCATTTATAGTCACCCATTCATTCAAGAGCA
Done.