Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401951.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5050.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 631

Length: 1052
ACGTcount: A:0.24, C:0.09, G:0.08, T:0.23

Warning! 378 characters in sequence are not A, C, G, or T


Found at i:301 original size:171 final size:171

Alignment explanation


    Indices: 1--349  Score: 405
    Period size: 171  Copynumber: 2.0  Consensus size: 171

                              *          *                                *  
          1 TATAGTCACCCATCCCTTTAAAAGCCTTATTACTAGCTTTAAATGGTTTTATAAGCTCAAAATTG
          1 TATAGTCACCCATCCCTTCAAAAGCCTTAGTACTAGCTTTAAATGGTTTTATAAGCTCAAAAATG

                           *            *               **********   *       
         66 ATTTTAAGTTAAATTTTTTTATATTTTTGGTAAAAACAAACTATNNNNNNNNNNTTATCTTGAGA
         66 ATTTTAAGTTAAATTGTTTTATATTTTTAGTAAAAACAAACTATAATTAAATATTTACCTTGAGA

                                      *    *      *  
        131 AACAAAAAGAAAAAAGCATTCATTGATAAGAGAAGTCCGTT
        131 AACAAAAAGAAAAAAGCATTCATTGACAAGACAAGTCCATT

                         *                    *               *              
        172 TATAGTCACCCATTCCTTCAAAAGCCTTAGTACTCGCTTTAAATGGTTTTGTAAAG-T-AATAAA
          1 TATAGTCACCCATCCCTTCAAAAGCCTTAGTACTAGCTTTAAATGGTTTTAT-AAGCTCAA-AAA

                        *                    *      *                        
        235 TGATTTTAAGTTGAATTGTTTTATATTTTTAGTTAAAACACACTATAATTAAATATTTACCTTGA
         64 TGATTTTAAGTTAAATTGTTTTATATTTTTAGTAAAAACAAACTATAATTAAATATTTACCTTGA

                  *       *       *    *               
        300 GAAACATAAAGAAACAAGCATTTATTGGCAAGACAAGTCCATT
        129 GAAACAAAAAGAAAAAAGCATTCATTGACAAGACAAGTCCATT

                   
        343 TATAGTC
          1 TATAGTC

        350 TTCTATTCCT


Statistics
Matches: 147,  Mismatches: 29, Indels: 4
        0.82            0.16        0.02

Matches are distributed among these distances:
 170    2  0.01
 171  142  0.97
 172    3  0.02

ACGTcount: A:0.37, C:0.13, G:0.12, T:0.36


Consensus pattern (171 bp):   
TATAGTCACCCATCCCTTCAAAAGCCTTAGTACTAGCTTTAAATGGTTTTATAAGCTCAAAAATG
ATTTTAAGTTAAATTGTTTTATATTTTTAGTAAAAACAAACTATAATTAAATATTTACCTTGAGA
AACAAAAAGAAAAAAGCATTCATTGACAAGACAAGTCCATT
Done.