Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401952.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5051.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3544
ACGTcount: A:0.25, C:0.09, G:0.09, T:0.25

Warning! 1132 characters in sequence are not A, C, G, or T


Found at i:2112 original size:172 final size:171

Alignment explanation


    Indices: 1749--2346  Score: 461
    Period size: 172  Copynumber: 3.5  Consensus size: 171

       1739 NNNNNNNNNN

                *                                   *    *         ** *      
       1749 ACTTTTCTTGCCAATGAATA-CTTTT-TTCATGTTTCTCATGGTAGACATTCAATTTTGGTCTAT
          1 ACTTCTCTTGCCAATGAATACCTTTTCTTCATGTTTCTCAAGGTAAACATTCAATCCTAGTCTAT

                                              *               *              
       1812 TTTAACCAAAAATGTACAAAACAATCAAATTTAACTCAATTTTGAGATTATAAAACCATTTAAAG
         66 TTTAACCAAAAATGTACAAAACAATCAAATTTAAATCAATTTTGAGATTACAAAACCATTTAAAG

                                                   * 
       1877 TGACTAATAAGGCTCTTGAAGGAATGAGTGACTATAAATGG
        131 TGACTAATAAGGCTCTTGAAGGAATGAGTGACTATAAATCG

                * *  *     *                       *                        *
       1918 ACTTGTTTTACCAATAAATACCTTTTGCTTCATGTTTCTGAAGGTAAACATTCAATCCTAGTCTG
          1 ACTTCTCTTGCCAATGAATACCTTTT-CTTCATGTTTCTCAAGGTAAACATTCAATCCTAGTCTA

                *  *             *   *                                       
       1983 TTTTGACTAAAAATGTACACATA-ATTCAAATTTAAATCAATTTTGAGATTACAAAACCATTTAA
         65 TTTTAACCAAAAATGTACA-AAACAATCAAATTTAAATCAATTTTGAGATTACAAAACCATTTAA

             **********     *           *              
       2047 ANNNNNNNNNNAGGCTTTTGAAGGAATGGGTGACTATAAATCG
        129 AGTGACTAATAAGGCTCTTGAAGGAATGAGTGACTATAAATCG

                        *                 *      **********         **       
       2090 ACTTCTCTTGCCCATGAATACCTTTTTCTTTATGTTTNNNNNNNNNNACATTCAATTATAGTCT-
          1 ACTTCTCTTGCCAATGAATACC-TTTTCTTCATGTTTCTCAAGGTAAACATTCAATCCTAGTCTA

            *      *      *      *      * *  *         **            *       
       2154 GTTTAACAAAAAATATA-AAAGCAATTCTACTTAAAATCAATTACG-GCATTACAAATCCATTTA
         65 TTTTAACCAAAAATGTACAAAACAA-TCAAATTTAAATCAATTTTGAG-ATTACAAAACCATTTA

                  *   *  *   *  *    *   *          * * 
       2217 AAGTGAGTAAGAATGCTTTTTAAGGTATGGGTGACTATAATTGG
        128 AAGTGACTAATAAGGCTCTTGAAGGAATGAGTGACTATAAATCG

                *                 *       *          *              *       *
       2261 ACTTATCTTGCCAATGAATACTTTTTTCTTTATGTTTCTCACGGTAAACATTCAATTCTAGTCTG
          1 ACTTCTCTTGCCAATGAATAC-CTTTTCTTCATGTTTCTCAAGGTAAACATTCAATCCTAGTCTA

                   *             
       2326 TTTTAACTAAAAATGTACAAA
         65 TTTTAACCAAAAATGTACAAA

       2347 GAATTCAANN


Statistics
Matches: 325,  Mismatches: 93, Indels: 18
        0.75            0.21        0.04

Matches are distributed among these distances:
 169   17  0.05
 170    8  0.02
 171  121  0.37
 172  170  0.52
 173    9  0.03

ACGTcount: A:0.34, C:0.15, G:0.12, T:0.36


Consensus pattern (171 bp):   
ACTTCTCTTGCCAATGAATACCTTTTCTTCATGTTTCTCAAGGTAAACATTCAATCCTAGTCTAT
TTTAACCAAAAATGTACAAAACAATCAAATTTAAATCAATTTTGAGATTACAAAACCATTTAAAG
TGACTAATAAGGCTCTTGAAGGAATGAGTGACTATAAATCG
Done.