Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401967.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5065.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 919

Length: 1532
ACGTcount: A:0.17, C:0.06, G:0.07, T:0.16

Warning! 838 characters in sequence are not A, C, G, or T


Found at i:695 original size:59 final size:59

Alignment explanation


    Indices: 601--712  Score: 170
    Period size: 59  Copynumber: 1.9  Consensus size: 59

        591 ATAAATGGGC

                               *                   *                   
        601 TTTTCTTGCCAATGAATGGCTCTTTCTTAAGGTTTCCCATGAAAAACATTCAATTATAA
          1 TTTTCTTGCCAATGAATGGATCTTTCTTAAGGTTTCCCAAGAAAAACATTCAATTATAA

                                 *      * *          *           
        660 TTTTCTTGCCAATGAATGGATTTTTCTTCATGTTTCCCAAGGAAAACATTCAA
          1 TTTTCTTGCCAATGAATGGATCTTTCTTAAGGTTTCCCAAGAAAAACATTCAA

        713 NNNNNNNNNN


Statistics
Matches: 47,  Mismatches: 6, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  59   47  1.00

ACGTcount: A:0.29, C:0.19, G:0.12, T:0.39


Consensus pattern (59 bp):   
TTTTCTTGCCAATGAATGGATCTTTCTTAAGGTTTCCCAAGAAAAACATTCAATTATAA
Done.