Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401968.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5066.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1021
ACGTcount: A:0.21, C:0.05, G:0.07, T:0.19

Warning! 491 characters in sequence are not A, C, G, or T


Found at i:828 original size:33 final size:33

Alignment explanation


    Indices: 783--851  Score: 120
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        773 ATAGACATTC

                               *             
        783 AATTATTATCTGTTTTAATCAAAAATATAAAAA
          1 AATTATTATCTGTTTTAATAAAAAATATAAAAA

                   *                         
        816 AATTATTGTCTGTTTTAATAAAAAATATAAAAA
          1 AATTATTATCTGTTTTAATAAAAAATATAAAAA

               
        849 AAT
          1 AAT

        852 ATAAAAAAAT


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   34  1.00

ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39


Consensus pattern (33 bp):   
AATTATTATCTGTTTTAATAAAAAATATAAAAA

Found at i:850 original size:10 final size:10

Alignment explanation


    Indices: 835--861  Score: 54
    Period size: 10  Copynumber: 2.7  Consensus size: 10

        825 CTGTTTTAAT

                      
        835 AAAAAATATA
          1 AAAAAATATA

                      
        845 AAAAAATATA
          1 AAAAAATATA

                   
        855 AAAAAAT
          1 AAAAAAT

        862 TTAATTATTG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   17  1.00

ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19


Consensus pattern (10 bp):   
AAAAAATATA
Done.