Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401984.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5080.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3091
ACGTcount: A:0.19, C:0.09, G:0.06, T:0.21

Warning! 1361 characters in sequence are not A, C, G, or T


Found at i:2544 original size:24 final size:23

Alignment explanation


    Indices: 2517--2563  Score: 58
    Period size: 24  Copynumber: 2.0  Consensus size: 23

       2507 CTAAATATCT

                                    
       2517 TTTTATTAAATATATATTTTTACA
          1 TTTTATTAAATAT-TATTTTTACA

                *   *     *        
       2541 TTTTTTTATATATTTTTTTTACA
          1 TTTTATTAAATATTATTTTTACA

       2564 ACTAACATTT


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  23    9  0.45
  24   11  0.55

ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66


Consensus pattern (23 bp):   
TTTTATTAAATATTATTTTTACA
Done.