Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401992.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5088.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 626

Length: 1044
ACGTcount: A:0.25, C:0.09, G:0.08, T:0.24

Warning! 361 characters in sequence are not A, C, G, or T


Found at i:420 original size:171 final size:169

Alignment explanation


    Indices: 3--427  Score: 404
    Period size: 171  Copynumber: 2.5  Consensus size: 169

          1 TG

                         *          *                       *                
          3 AGTGACTATAAATGGACTTTTCTTTCCAATGGATATCTTTTTCTTTACATTTCTCAAGGAAAACA
          1 AGTGACTATAAATAGACTTTTCTTACCAATGGATATCTTTTTCTTTACGTTTCTCAA--AAAACA

                                *                     **********         *   
         68 TTCAATTATAATCTGTTTTACTAAAAAATATAAAAAAATTCANNNNNNNNNNAATTATAAGGTTA
         64 TTCAATTATAATCTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAAACAATTATAAGATTA

                                      *    *         
        133 TAAAATCATTTAAAACGAGTAATAAGGCTTTTGACGGCATC
        129 TAAAATCATTTAAAACGAGTAATAAGACTTTCGACGGCATC

                        *           * *                  *       *     ******
        174 AGTGACTATAAAAAGACTTTTCTTGCTAATGGATATCTTTTTCTTCACGTTTCCCAAGGNNNNNN
          1 AGTGACTATAAATAGACTTTTCTTACCAATGGATATCTTTTTCTTTACGTTTCTCAA--AAAACA

            ****                    *            *                    *      
        239 NNNNATTATAATCTGTTTTAATAATAAATATAAAAAAGTTCAACTTAAAAACAATTATGAGATTA
         64 TTCAATTATAATCTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAAACAATTATAAGATT-

                 *         *                          *
        304 ATAAACT-ATTTAAAGCGAGTAATAAGACTTTCGAAC-GCATT
        128 ATAAAATCATTTAAAACGAGTAATAAGACTTTCG-ACGGCATC

            *                             *                                  
        345 GGTGACTATAAATAGACTTTTCTTACCAATAGATATCTTTTTCTTTACGTTTCTCAAAACAGACA
          1 AGTGACTATAAATAGACTTTTCTTACCAATGGATATCTTTTTCTTTACGTTTCTCAAAA-A-ACA

                              
        410 TTCAATTATAATCTGTTT
         64 TTCAATTATAATCTGTTT

        428 NNNNNNNNNN


Statistics
Matches: 196,  Mismatches: 54, Indels: 8
        0.76            0.21        0.03

Matches are distributed among these distances:
 171  188  0.96
 172    8  0.04

ACGTcount: A:0.36, C:0.13, G:0.11, T:0.36


Consensus pattern (169 bp):   
AGTGACTATAAATAGACTTTTCTTACCAATGGATATCTTTTTCTTTACGTTTCTCAAAAAACATT
CAATTATAATCTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAAACAATTATAAGATTATA
AAATCATTTAAAACGAGTAATAAGACTTTCGACGGCATC
Done.