Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401993.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5089.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1217
ACGTcount: A:0.31, C:0.11, G:0.10, T:0.18

Warning! 371 characters in sequence are not A, C, G, or T


Found at i:778 original size:29 final size:29

Alignment explanation


    Indices: 746--812  Score: 100
    Period size: 29  Copynumber: 2.3  Consensus size: 29

        736 NNNNNNNNNN

                                          
        746 GGCACCTAATATAA-TTCAAAAGGTGCAAA
          1 GGCACCTAATA-AAGTTCAAAAGGTGCAAA

                                    **   
        775 GGCACCTAATAAAGTTCAAAAGGTTTAAA
          1 GGCACCTAATAAAGTTCAAAAGGTGCAAA

                     
        804 GGCACCTAA
          1 GGCACCTAA

        813 CCGGGTTAAA


Statistics
Matches: 35,  Mismatches: 2, Indels: 2
        0.90            0.05        0.05

Matches are distributed among these distances:
  28    2  0.06
  29   33  0.94

ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21


Consensus pattern (29 bp):   
GGCACCTAATAAAGTTCAAAAGGTGCAAA
Done.