Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402032.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5127.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1092
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.32

Warning! 163 characters in sequence are not A, C, G, or T


Found at i:815 original size:171 final size:173

Alignment explanation


    Indices: 522--851  Score: 402
    Period size: 171  Copynumber: 1.9  Consensus size: 173

        512 NNNNNNNNNA

                           *            *  *             *         *        *
        522 AATTCAACTTAAAATCAATTATGAGATTTTATAACCACTTAAAGCGAGTAACAAGGCCTTTGAAG
          1 AATTCAACTTAAAATAAATTATGAGATTATAAAACCACTTAAAGCAAGTAACAAGACCTTTGAAA

                * *           *         *    *   *            *              
        587 GAATGGGTGACTATAAATGGACTTTTTTTTCTAGTGATTGCCTTTTTCTTTACATTTCTTG-GGA
         66 GAATAGATGACTATAAATAGACTTTTTTGTCTAATGAATGCCTTTTTCTTCACATTTCTTGAGG-

              *  *            *                         
        651 TATACGTTCAATTA-TA-CTCTATTTTAACCAAGAATGCAAAAC
        130 TAGACATTCAATTATTATATCTATTTTAACCAAGAATGCAAAAC

                  *                                            *     *       
        693 AATTCACCTTAAAATAAATTATGAGATTATAAAACCACTTAAAGCAAGTAATAAGACTTTTGAAA
          1 AATTCAACTTAAAATAAATTATGAGATTATAAAACCACTTAAAGCAAGTAACAAGACCTTTGAAA

                                                       *                     
        758 GAATAAGAT-ACTATAAATAGACTTTTCTTGTC-AATGAATG-TTTGTTTCTTCACATTTCTTGA
         66 GAAT-AGATGACTATAAATAGACTTTT-TTGTCTAATGAATGCCTT-TTTCTTCACATTTCTTGA

                                            
        820 GGTAGACATTCAATTATTATATCTATTTTAAC
        128 GGTAGACATTCAATTATTATATCTATTTTAAC

        852 TANNNNNNNN


Statistics
Matches: 133,  Mismatches: 20, Indels: 10
        0.82            0.12        0.06

Matches are distributed among these distances:
 170    2  0.02
 171  110  0.83
 172   10  0.08
 173   11  0.08

ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37


Consensus pattern (173 bp):   
AATTCAACTTAAAATAAATTATGAGATTATAAAACCACTTAAAGCAAGTAACAAGACCTTTGAAA
GAATAGATGACTATAAATAGACTTTTTTGTCTAATGAATGCCTTTTTCTTCACATTTCTTGAGGT
AGACATTCAATTATTATATCTATTTTAACCAAGAATGCAAAAC
Done.