Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397731.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_103.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6946
ACGTcount: A:0.17, C:0.07, G:0.06, T:0.19

Warning! 3536 characters in sequence are not A, C, G, or T


Found at i:4923 original size:171 final size:171

Alignment explanation


    Indices: 4636--4972  Score: 388
    Period size: 171  Copynumber: 2.0  Consensus size: 171

       4626 NNNNNNNNNT

                   *                * * * *               *                  
       4636 TAAAACAGACTATAATTGAATATCTATCTCGAGAAACGTGAAGAAACGAGCATTCATTGACAAGA
          1 TAAAACAAACTATAATTGAATATCAAACACAAGAAACGTGAAGAAAAGAGCATTCATTGACAAGA

                     *     *    * *   * **                         *    * *  
       4701 AAAGTCCATTTATGGTCACCTATTCCTTTTAAAGCCTAATTACACGCTTTAAATATTTTTCTTAT
         66 AAAGTCCATATATGGCCACCCAATCCGTCAAAAGCCTAATTACACGCTTTAAATAGTTTTATAAT

              *                                      
       4766 CTCATAATTCACTTTAAGTTGAATTTTTTTACATTTTCCAA
        131 CTAATAATTCACTTTAAGTTGAATTTTTTTACATTTTCCAA

                                 *                             *       *     
       4807 TAAAACAAACTATAATTGAATGTCAAACACAAGAAACGTGAAGAAAAGAGCTTTCATTGGCAAGA
          1 TAAAACAAACTATAATTGAATATCAAACACAAGAAACGTGAAGAAAAGAGCATTCATTGACAAGA

                 *       *   *                ** *                           
       4872 AAAGTTCATATATTGCCTCCCAATCCGTCAAAAGGTTTATTACTA-GCTTTAAATAGTTTTATAA
         66 AAAGTCCATATATGGCCACCCAATCCGTCAAAAGCCTAATTAC-ACGCTTTAAATAGTTTTATAA

                      * *          *        *    
       4936 TCTAATAATTTATTTTAAGTTGAGTTTTTTTATATTT
        130 TCTAATAATTCACTTTAAGTTGAATTTTTTTACATTT

       4973 ATGATTAANN


Statistics
Matches: 135,  Mismatches: 30, Indels: 2
        0.81            0.18        0.01

Matches are distributed among these distances:
 171  134  0.99
 172    1  0.01

ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36


Consensus pattern (171 bp):   
TAAAACAAACTATAATTGAATATCAAACACAAGAAACGTGAAGAAAAGAGCATTCATTGACAAGA
AAAGTCCATATATGGCCACCCAATCCGTCAAAAGCCTAATTACACGCTTTAAATAGTTTTATAAT
CTAATAATTCACTTTAAGTTGAATTTTTTTACATTTTCCAA
Done.