Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402033.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5128.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 614

Length: 1024
ACGTcount: A:0.26, C:0.10, G:0.07, T:0.29

Warning! 285 characters in sequence are not A, C, G, or T


Found at i:528 original size:172 final size:169

Alignment explanation


    Indices: 1--579  Score: 556
    Period size: 170  Copynumber: 3.4  Consensus size: 169

                                              *     *  * * **    *     *     
          1 TGAAGAAAAAAGCATTCATT-AGCAAGAAAAGTCCATTTATAGTCACCCATTCATTCAAGAGCCT
          1 TGAA-AAAAAAGCATTCATTGA-CAAGAAAAGTCTATTTACAGCCTCTTATTCCTTCAAAAGCCT

                        *          *             *    *      * *       *     
         65 TATTGCTCGTTTGAAATGGTTTTCTAATCTCATAATTGATTTCAAATTGAAATTTTTTATATTTT
         64 TATTGCTCGTTTTAAATGGTTTTATAATCTCATAATTAATTTTAAA-TGTATTTTTTTACATTTT

                      *                *  *           
        130 TTATTAAAACTGACTATAATTGAATATCTACCTTAAGAAACA
        128 TTATTAAAACAGACTATAATTGAATATTTATCTTAAGAAACA

                                  *                 *               *  *  *  
        172 TGAAAAAAAAGCATTCATAT-ATAAGAAAAGT-TCATTTATAGCCTCTTATTCCTTTAACAGTCT
          1 TGAAAAAAAAGCATTCAT-TGACAAGAAAAGTCT-ATTTACAGCCTCTTATTCCTTCAAAAGCCT

             *         *                         *         *                 
        235 TTTTGCTCGTTCTAAATGGTTTTATAATCTCATAATTTATTTTAAATTTAATTTTTTTACATTTT
         64 TATTGCTCGTTTTAAATGGTTTTATAATCTCATAATTAATTTTAAATGT-ATTTTTTTACATTTT

             *       * *             *   *    *      *
        300 TCATTAAAATATACTATAATTGAATGTTTGTCTTTAGAAACG
        128 TTATTAAAACAGACTATAATTGAATATTTATCTTAAGAAACA

                            *                        *                       
        342 TGAAGAAAAAAGCATTTATTGACAAGAAAAGTCTATTTACATCCT-TTCATTCCTTCAAAAGCGC
          1 TGAA-AAAAAAGCATTCATTGACAAGAAAAGTCTATTTACAGCCTCTT-ATTCCTTCAAAA--GC

                  *            *            *            * *            *    
        406 CTTATTACTCGTTTTAAATAGTTTTATAATCTAATAATTAATTTTTAGTGTATTTTTTTAGATTT
         62 CTTATTGCTCGTTTTAAATGGTTTTATAATCTCATAATTAATTTTAAATGTATTTTTTTACATTT

                               *     *                  
        471 TTTATTAAAACAGA-TAATTATTGACTATTTATCTTAAGAAACA
        127 TTTATTAAAACAGACT-ATAATTGAATATTTATCTTAAGAAACA

                                 *                 *  * * **             *   
        514 TGAAAATAAAAGCATTCATTGGCAAGAAAAGTCTATTTATAGTCACCAATTCCTTCAAAAGTCTT
          1 TGAAAA-AAAAGCATTCATTGACAAGAAAAGTCTATTTACAGCCTCTTATTCCTTCAAAAGCCTT

             
        579 A
         65 A

        580 NNNNNNNNNN


Statistics
Matches: 331,  Mismatches: 65, Indels: 25
        0.79            0.15        0.06

Matches are distributed among these distances:
 169    1  0.00
 170  142  0.43
 171   51  0.15
 172   94  0.28
 173   43  0.13

ACGTcount: A:0.36, C:0.13, G:0.10, T:0.40


Consensus pattern (169 bp):   
TGAAAAAAAAGCATTCATTGACAAGAAAAGTCTATTTACAGCCTCTTATTCCTTCAAAAGCCTTA
TTGCTCGTTTTAAATGGTTTTATAATCTCATAATTAATTTTAAATGTATTTTTTTACATTTTTTA
TTAAAACAGACTATAATTGAATATTTATCTTAAGAAACA
Done.