Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402035.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_513.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23829
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.20

Warning! 11231 characters in sequence are not A, C, G, or T


Found at i:10363 original size:171 final size:171

Alignment explanation


    Indices: 9925--10364  Score: 409
    Period size: 171  Copynumber: 2.6  Consensus size: 171

       9915 GTCTGCCTCG

                         *   *           *          *       *                
       9925 AGAAAAAGATATCTATTTGCAAGAAAAGTTCATTTATACTCACCCAT-ACTTTCGAAAGCCTTAT
          1 AGAAAAAGATATCCATTAGCAAGAAAAGTCCATTTATACTAACCCATGCCTTT-GAAAGCCTTAT

                                       *     **********  *                   
       9989 TACTCGCTTTAAATAGTTTTTTAATCTTATAATNNNNNNNNNNTTGAACTTTTTTATATTTATTA
         65 TACTCGCTTTAAATAGTTTTTTAATCTCATAATTAATTTTAGTTTAAACTTTTTTATATTTATTA

                  * *         **    *   *   *       * 
      10054 TTAAAATATATTATAATTGTATGTTTACCTCGTGAAACATGA
        130 TTAAAACAGATTATAATTAAATGTATACATCGAGAAACATAA

                           *                     **********     *            
      10096 AGAAAAAGATATCCAATAGCAAGAAAAGTCCATTTATNNNNNNNNNNGCCTTCGAAAGCCTTATT
          1 AGAAAAAGATATCCATTAGCAAGAAAAGTCCATTTATACTAACCCATGCCTTTGAAAGCCTTATT

                *                 *                          *            *  
      10161 ACTCACTTTAAAT-GATTTTATAAAT-TCATAATTAATTTTAGTTTAAATTTTTTTATATTTTTT
         66 ACTCGCTTTAAATAG-TTTT-TTAATCTCATAATTAATTTTAGTTTAAACTTTTTTATATTTATT

                                                       
      10224 ATTAAAACAGATTATAATTAAATGTATACATCGAGAAACATAA
        129 ATTAAAACAGATTATAATTAAATGTATACATCGAGAAACATAA

                             *      *            **    *             *       
      10267 AGAAAAAGATATCCATTGGCAAGAGAAGTCCATTTATTGTAACTCATGCCTTTGAAACCCTTATT
          1 AGAAAAAGATATCCATTAGCAAGAAAAGTCCATTTATACTAACCCATGCCTTTGAAAGCCTTATT

                                             
      10332 ACTCGCTTTAAATAGTTTTTTAATCTCATAATT
         66 ACTCGCTTTAAATAGTTTTTTAATCTCATAATT

      10365 NNNNNNNNNN


Statistics
Matches: 207,  Mismatches: 57, Indels: 10
        0.76            0.21        0.04

Matches are distributed among these distances:
 170    5  0.02
 171  194  0.94
 172    8  0.04

ACGTcount: A:0.36, C:0.13, G:0.09, T:0.38


Consensus pattern (171 bp):   
AGAAAAAGATATCCATTAGCAAGAAAAGTCCATTTATACTAACCCATGCCTTTGAAAGCCTTATT
ACTCGCTTTAAATAGTTTTTTAATCTCATAATTAATTTTAGTTTAAACTTTTTTATATTTATTAT
TAAAACAGATTATAATTAAATGTATACATCGAGAAACATAA
Done.