Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402038.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5132.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1158
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.30

Warning! 193 characters in sequence are not A, C, G, or T


Found at i:986 original size:173 final size:171

Alignment explanation


    Indices: 560--971  Score: 547
    Period size: 171  Copynumber: 2.4  Consensus size: 171

        550 NNNNNNNNTT

                     *                    *                                * 
        560 ACTATAAATAGACTTTTCTTGCCAATGAATACTTTTTTCTTAATGTTTCTCAGGGTAGACATTTA
          1 ACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTAATGTTTCTCAGGGTAGACATTCA

                      *   *                  *             *        *        
        625 ATTCTAGCCTATTTGAACCAAAAATGTACAAAACATTCAAACTTAAATCAATTTTGTGATTATAA
         66 ATTCTAGCCTGTTTTAACCAAAAATGTACAAAAAATTCAAACTTAAACCAATTTTGAGATTATAA

                                   *                 
        690 ATCATTTAAAGTGAATAATAAGGTTTTTGAAGGAATGAGTG
        131 ATCATTTAAAGTGAATAATAAGGCTTTTGAAGGAATGAGTG

                      *            *     *           *          *            
        731 ACTATAAATGCACTTTTCTTGCCGATGAAAGCTTTTTTCTTCATGTTTCTCAAGGTAGACATTCA
          1 ACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTAATGTTTCTCAGGGTAGACATTCA

                               *       *         *   *                       
        796 ATTCTAGCCTGTTTTAACCGAAAATGTTCAAAAAATTGAAATTTAAACCAATTTTGAGATTATAA
         66 ATTCTAGCCTGTTTTAACCAAAAATGTACAAAAAATTCAAACTTAAACCAATTTTGAGATTAT--

                            *                       *   
        861 AAAT-ATTTAAAGTGAGTAATAAGGCTTTTGAAGGAGATGGGTG
        129 AAATCATTTAAAGTGAATAATAAGGCTTTTGAAGGA-ATGAGTG

                        *        *           * *     *  *            *       
        904 ACTATAAATGGAGTTTTCTTGTCAATGAATGCTCTCTTCTTTATCTTTCTCAGGGTAAACATTCA
          1 ACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTAATGTTTCTCAGGGTAGACATTCA

               
        969 ATT
         66 ATT

        972 ATAATATGTT


Statistics
Matches: 207,  Mismatches: 31, Indels: 4
        0.86            0.13        0.02

Matches are distributed among these distances:
 171  111  0.54
 172   29  0.14
 173   67  0.32

ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38


Consensus pattern (171 bp):   
ACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTAATGTTTCTCAGGGTAGACATTCA
ATTCTAGCCTGTTTTAACCAAAAATGTACAAAAAATTCAAACTTAAACCAATTTTGAGATTATAA
ATCATTTAAAGTGAATAATAAGGCTTTTGAAGGAATGAGTG

Done.