Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402057.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5154.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 717

Length: 1196
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.26

Warning! 271 characters in sequence are not A, C, G, or T


Found at i:1058 original size:170 final size:170

Alignment explanation


    Indices: 740--1196  Score: 398
    Period size: 170  Copynumber: 2.7  Consensus size: 170

        730 NNNNNNNNAT

                         *         *                                         
        740 ATTCAATTATAATTTATTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAACAT
          1 ATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAACAT

             *                                                               
        805 ATAAAACCATTTAAAGTGAGTAACAAAAATTTTGAAGGAATGGTGACTATAAATGGACTTTTCTA
         66 AAAAAACCATTTAAAGTGAGTAACAAAAATTTTGAAGGAATGGTGACTATAAATGGACTTTTCTA

                      **                            
        870 GACAATGAATGTCTTTTTCTTCATGCTTCTAGAGGTAGCC
        131 GACAATGAATACCTTTTTCTTCATGCTTCTAGAGGTAGCC

                           *      *         *        *  *       *        *  *
        910 ATTCAATTATAATCTGTTTTAATAAAAAATGTTAAAAAATTTAATTTAAAATCAATTATAGGA-T
          1 ATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTAT-GAACA

                                    *   *       *       **********           
        974 TAAAAAACCATTTAAAGTGAGTAATAAAGATTTTGAGGGAATGGNNNNNNNNNNTGGACTTTTCT
         65 TAAAAAACCATTTAAAGTGAGTAACAAAAATTTTGAAGGAATGGTGACTATAAATGGACTTTTCT

                                    * *    *   * * ** 
       1039 AGACAATGAATACCTTTTTCTTCACGTTTCCCA-AAGCAAAC
        130 AGACAATGAATACCTTTTTCTTCATGCTT-CTAGAGGTAGCC

             *              *  *          *      **              *       ****
       1080 ACTCAATTATAAGT-TGTTCTAACAAAAAAAGTAAAACTATTCAACTTAAAATCAATTATGCGGT
          1 ATTCAATTATAA-TCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAACA

              * *                   *  ***        *              
       1144 TATACAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGAAATGAGTGACTATA
         65 TAAAAAACCATTTAAAGTGAGTAACAAAAATTTTGAAGGAATG-GTGACTATA


Statistics
Matches: 224,  Mismatches: 58, Indels: 9
        0.77            0.20        0.03

Matches are distributed among these distances:
 169    1  0.00
 170  217  0.97
 171    6  0.03

ACGTcount: A:0.41, C:0.11, G:0.12, T:0.33


Consensus pattern (170 bp):   
ATTCAATTATAATCTATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAACAT
AAAAAACCATTTAAAGTGAGTAACAAAAATTTTGAAGGAATGGTGACTATAAATGGACTTTTCTA
GACAATGAATACCTTTTTCTTCATGCTTCTAGAGGTAGCC
Done.