Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402058.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5156.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1717
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.20

Warning! 730 characters in sequence are not A, C, G, or T


Found at i:1624 original size:171 final size:162

Alignment explanation


    Indices: 1398--1717  Score: 302
    Period size: 171  Copynumber: 1.9  Consensus size: 162

       1388 GACTATAAAC

                                   * *               **     *                
       1398 GGACTTTTCTTACCAATGAATGCTTGTTTTTTCAAGTTTCTTGAGGCAGACATTCAAATATAGTC
          1 GGACTTTTCTTACCAATGAATGCATCTTTTTTCAAGTTTCTCAAGGCAAACATTCAAATATAGTC

                            *     *  *      *              *              *  
       1463 TGTTTGAACCAAAAATGTAAAAGAATTCAACTTAAAATCAATAATGATATTAT-AAAACCATTTA
         66 TGTTTGAACCAAAAATATAAAAAAACTCAACTCAAAATCAATAATGAGATTATAAAAACCATGTA

                                                      
       1527 AAGCAAGTAATGAGGCTTTTGAAGGAATACGNNNNNNNNNNT
        131 AAGCAAGTAATGAGGCTTTTGAAGGAATACG----------T

                       *                       *          **          *   *  
       1569 GGACTTTTCTTGCCAATGAATGCATCTTTCTTT-ACGTTTCTCAAGTTAAACATTCAATTATTGT
          1 GGACTTTTCTTACCAATGAATGCATCTTT-TTTCAAGTTTCTCAAGGCAAACATTCAAATATAGT

                  *  **                   *            *                     
       1633 CTGTTTTAATGAAAAATATAAAAAAACTCAGCTCAAAATCAATTATGAGATTATAAAAAAACCAT
         65 CTGTTTGAACCAAAAATATAAAAAAACTCAACTCAAAATCAATAATGAGATTAT--AAAAACCAT

                   *            
       1698 GTAAAGCGAGTAATGAGGCT
        128 GTAAAGCAAGTAATGAGGCT


Statistics
Matches: 122,  Mismatches: 23, Indels: 5
        0.81            0.15        0.03

Matches are distributed among these distances:
 171   93  0.76
 172    3  0.02
 174   26  0.21

ACGTcount: A:0.37, C:0.13, G:0.14, T:0.33


Consensus pattern (162 bp):   
GGACTTTTCTTACCAATGAATGCATCTTTTTTCAAGTTTCTCAAGGCAAACATTCAAATATAGTC
TGTTTGAACCAAAAATATAAAAAAACTCAACTCAAAATCAATAATGAGATTATAAAAACCATGTA
AAGCAAGTAATGAGGCTTTTGAAGGAATACGT
Done.