Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402075.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5171.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 631

Length: 1053
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.26

Warning! 279 characters in sequence are not A, C, G, or T


Found at i:855 original size:171 final size:171

Alignment explanation


    Indices: 547--893  Score: 439
    Period size: 171  Copynumber: 2.0  Consensus size: 171

        537 NNNNNNNNNN

                 *                *                *   *                     
        547 ATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGCCTTTTGAAGGAATCGATGACTATAAA
          1 ATTATAAGATTATAAAACTATTCAAAGCGAGTAATAAGCATTTCGAAGGAATCGATGACTATAAA

                *                           *  *     *         * *      *  * 
        612 TGAACTTTTCTTGTCAATGAATGCTTGTTTCTTCGCATTTCTCAAGGTAAATATTCAATCGTAGT
         66 TGAAATTTTCTTGTCAATGAATGCTTGTTTCTACGAATTTCCCAAGGTAAACAATCAATCATACT

                     *        *                       
        677 ATGTTTTATTC-AAAAATTTAAAAAAATTCAACTTAAAATCA
        131 ATGTTTTA-ACAAAAAATATAAAAAAATTCAACTTAAAATCA

            *                                             *     * *     *    
        718 GTTATAAGATTATAAAACTATTCAAAGCGAGTAATAAGCATTTCGAGGGAATGGGTGACTGTAAA
          1 ATTATAAGATTATAAAACTATTCAAAGCGAGTAATAAGCATTTCGAAGGAATCGATGACTATAAA

                                      *                 **                   
        783 TGAAATTTTCTTGTCAATGAATGCTTTTTTCTAC-AAGTTTCCCGGGGTAAACAATCAA-CTATA
         66 TGAAATTTTCTTGTCAATGAATGCTTGTTTCTACGAA-TTTCCCAAGGTAAACAATCAATC-ATA

              *                                        
        846 CTCTGTTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCA
        129 CTATGTTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCA

                 
        889 ATTAT
          1 ATTAT

        894 GANNNNNNNN


Statistics
Matches: 149,  Mismatches: 24, Indels: 6
        0.83            0.13        0.03

Matches are distributed among these distances:
 170    3  0.02
 171  146  0.98

ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35


Consensus pattern (171 bp):   
ATTATAAGATTATAAAACTATTCAAAGCGAGTAATAAGCATTTCGAAGGAATCGATGACTATAAA
TGAAATTTTCTTGTCAATGAATGCTTGTTTCTACGAATTTCCCAAGGTAAACAATCAATCATACT
ATGTTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCA
Done.