Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402077.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5173.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2479
ACGTcount: A:0.20, C:0.07, G:0.08, T:0.18

Warning! 1151 characters in sequence are not A, C, G, or T


Found at i:396 original size:170 final size:171

Alignment explanation


    Indices: 220--528  Score: 388
    Period size: 171  Copynumber: 1.8  Consensus size: 171

        210 TGAATGGCTC

                           ** *                            *                 
        220 TTTCTTCACGTTTCTTGATGTAAACATTCAATTATTACATATTTTAATAAAAAATGT-AAAAAAT
          1 TTTCTTCACGTTTCTCAAGGTAAACATTCAATTATTACATATTTTAACAAAAAATGTAAAAAAAT

                          *       *                   *           *          
        284 TCAACTTAAAATCAGTTATGAGGTTATACAA-CCATTTAAAGTGAGTAATAAGGGTTTCGAAGGC
         66 TCAACTTAAAATCAATTATGAGCTTATA-AATCCATTTAAAGCGAGTAATAAGGCTTTCGAAGGC

                                                      
        348 GTGGGTGACTGTAAATGGACTTTTCCTGCCAATGAAGGACTT
        130 GTGGGTGACTGTAAATGGACTTTTCCTGCCAATGAAGGACTT

                                  *     *      **********   *                
        390 TTTCTTCACGTTTCTCAAGGTAGACATTTAATTATNNNNNNNNNNAACCAAAAATGTAAAAAAAT
          1 TTTCTTCACGTTTCTCAAGGTAAACATTCAATTATTACATATTTTAACAAAAAATGTAAAAAAAT

                      *                                                     *
        455 TCAACTTAAAGTCAATTATGAGCTTATAAATCCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCT
         66 TCAACTTAAAATCAATTATGAGCTTATAAATCCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCG

                     
        520 TGGGTGACT
        131 TGGGTGACT

        529 ATANNNNNNN


Statistics
Matches: 114,  Mismatches: 23, Indels: 3
        0.81            0.16        0.02

Matches are distributed among these distances:
 170   42  0.37
 171   72  0.63

ACGTcount: A:0.35, C:0.13, G:0.16, T:0.33


Consensus pattern (171 bp):   
TTTCTTCACGTTTCTCAAGGTAAACATTCAATTATTACATATTTTAACAAAAAATGTAAAAAAAT
TCAACTTAAAATCAATTATGAGCTTATAAATCCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCG
TGGGTGACTGTAAATGGACTTTTCCTGCCAATGAAGGACTT
Done.