Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402080.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5176.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2444
ACGTcount: A:0.25, C:0.11, G:0.08, T:0.29

Warning! 646 characters in sequence are not A, C, G, or T


Found at i:446 original size:22 final size:22

Alignment explanation


    Indices: 413--454  Score: 59
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        403 CTTTTTTATG

                                  
        413 TTTTTGTATAAAAAAGATTACA
          1 TTTTTGTATAAAAAAGATTACA

                          *      
        435 TTTTTAGT-TAAAACAGATTA
          1 TTTTT-GTATAAAAAAGATTA

        455 TAATTGAATG


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  22   16  0.89
  23    2  0.11

ACGTcount: A:0.43, C:0.05, G:0.10, T:0.43


Consensus pattern (22 bp):   
TTTTTGTATAAAAAAGATTACA

Found at i:2119 original size:11 final size:11

Alignment explanation


    Indices: 2103--2128  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

       2093 TGGTACAAAA

                       
       2103 AGTCCAACTAT
          1 AGTCCAACTAT

                       
       2114 AGTCCAACTAT
          1 AGTCCAACTAT

                
       2125 AGTC
          1 AGTC

       2129 ACCCAATACA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.35, C:0.27, G:0.12, T:0.27


Consensus pattern (11 bp):   
AGTCCAACTAT
Done.