Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402090.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5185.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 994

Length: 1657
ACGTcount: A:0.14, C:0.10, G:0.07, T:0.18

Warning! 853 characters in sequence are not A, C, G, or T


Found at i:1518 original size:22 final size:22

Alignment explanation


    Indices: 1490--1543  Score: 72
    Period size: 22  Copynumber: 2.5  Consensus size: 22

       1480 TGAGGCAACT

                     * *          
       1490 TCAATGCTGTAGCGCTGAAGAA
          1 TCAATGCTGCAACGCTGAAGAA

                        *         
       1512 TCAATGCTGCAATGCTGAAGAA
          1 TCAATGCTGCAACGCTGAAGAA

                *     
       1534 TCAACGCTGC
          1 TCAATGCTGC

       1544 GGCACTATGG


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  22   28  1.00

ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22


Consensus pattern (22 bp):   
TCAATGCTGCAACGCTGAAGAA
Done.