Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018402094.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_519.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28454
ACGTcount: A:0.25, C:0.08, G:0.09, T:0.25
Warning! 9266 characters in sequence are not A, C, G, or T
Found at i:368 original size:171 final size:171
Alignment explanation
Indices: 1--463 Score: 523
Period size: 171 Copynumber: 2.7 Consensus size: 171
* *
1 ATAACTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAGGGACCTTTCTTGACA
1 ATAATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAGGGACTTTTCTTGACA
** * * *
66 ACAAATGCATTTTT-TCCACGTTTCTCTAAGTAGACACTGAATTATAGTCTGTTTTAGTGAAAAA
66 ATGAATGCATTTTTCTTCACGTTTCTCTAAGTAGACATTGAATTATAGTCTGTTTTAGTAAAAAA
* * * **********
130 TGTAAAACAATTCAGCTTNNNNNNNNNNATGAGTATAAAAA
131 TATAAAAAAATTCAACTTAAAATCAATTATGAGTATAAAAA
* * * * *
171 ACAATTTAAAGTGAATAATAAGGCTTTTGAAGGAATAGATGACTATAAAGGGACTTTTCTTGATA
1 ATAATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAGGGACTTTTCTTGACA
* *
236 ATGAATGCATTTTTCTTCATGTTTCTCTAAATAGACATTGAATTATAGTCTGTTTTAGTAAAAAA
66 ATGAATGCATTTTTCTTCACGTTTCTCTAAGTAGACATTGAATTATAGTCTGTTTTAGTAAAAAA
**********
301 TATAAAAAAATTCAACTTAAAATCAATTNNNNNNNNNNAAA
131 TATAAAAAAATTCAACTTAAAATCAATTATGAGTATAAAAA
* * * * *
342 ATAATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGAATATAAATGGATTTTTCCTGCCA
1 ATAATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAGGGACTTTTCTTGACA
* *
407 ATGAATGCCTTTTTCTTAACGTTTCTCTAAGTAGACATTGAATTATAGTCTGTTTTA
66 ATGAATGCATTTTTCTTCACGTTTCTCTAAGTAGACATTGAATTATAGTCTGTTTTA
464 ACCAAAAATG
Statistics
Matches: 241, Mismatches: 51, Indels: 1
0.82 0.17 0.00
Matches are distributed among these distances:
170 70 0.29
171 171 0.71
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.34
Consensus pattern (171 bp):
ATAATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAGGGACTTTTCTTGACA
ATGAATGCATTTTTCTTCACGTTTCTCTAAGTAGACATTGAATTATAGTCTGTTTTAGTAAAAAA
TATAAAAAAATTCAACTTAAAATCAATTATGAGTATAAAAA
Found at i:1426 original size:171 final size:161
Alignment explanation
Indices: 1227--1555 Score: 333
Period size: 171 Copynumber: 2.0 Consensus size: 161
1217 AAGGCTTTTG
* * * *
1227 AAGGAATGGGTGGCTATAAAAGGACTTTTCTT-CCGAATGAATACCTTTTTCTTCATGTTTCT-T
1 AAGGAATGGGTGACTATAAAAGGACTTTTCTTGCC-AACGAATACCTTTCTCTTCACGTTTCTCT
* * * * *
1290 GAGGTAGACAATCAATTATAGTCTGTTTTAA-AAAAATATATAAAAAAATTCAACTTCAAATCAT
65 -AAGTAGACAATCAATTATAGTCTGTTTTAACAAAAA-ATATAAAAAAATCCAACTTAAAATAAA
*
1354 TTATGAGATTATAAAACAATTTAAAGCAAGNNNNNNNNNNTTTA
128 TTATAAGATTATAAAACAATTTAAAGCAAG----------TTTA
* * * *
1398 AAGGAATTGGTGACTAT-AATGAGACTTTTCTTGCCAACGAATGCGTTTCTCTTCACGTTTCTCT
1 AAGGAATGGGTGACTATAAAAG-GACTTTTCTTGCCAACGAATACCTTTCTCTTCACGTTTCTCT
* * * *
1462 AAGTAGACATTTAATTATAGTTTGTTTTAACCAAAAATATAAAAAAATCCAACTTAAAATAAATT
65 AAGTAGACAATCAATTATAGTCTGTTTTAACAAAAAATATAAAAAAATCCAACTTAAAATAAATT
*
1527 ATAAGATTATAAAACCATTTAAAGCAAGT
130 ATAAGATTATAAAACAATTTAAAGCAAGT
1556 AATAAGGCTT
Statistics
Matches: 135, Mismatches: 19, Indels: 18
0.78 0.11 0.10
Matches are distributed among these distances:
161 1 0.01
170 3 0.02
171 124 0.92
172 7 0.05
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.34
Consensus pattern (161 bp):
AAGGAATGGGTGACTATAAAAGGACTTTTCTTGCCAACGAATACCTTTCTCTTCACGTTTCTCTA
AGTAGACAATCAATTATAGTCTGTTTTAACAAAAAATATAAAAAAATCCAACTTAAAATAAATTA
TAAGATTATAAAACAATTTAAAGCAAGTTTA
Found at i:2106 original size:171 final size:169
Alignment explanation
Indices: 1817--2859 Score: 516
Period size: 171 Copynumber: 6.1 Consensus size: 169
1807 NNNNNNNNNN
* * *
1817 TTATAAAATAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAGTGGGTGACTATAAAGGGACTTTT
1 TTATAAAATAATTTAAAGAGAGTAATAAGGCTTTTGAAAGAGTGGGTGACTATAAATGGACTTTT
* * * * ** *
1882 CTTGCCAACGAATGTTTTTTTCTTCACAT-TTT-TCTA-ATTAGACATTGAATTATAGTCTGTTT
66 CTT-CCAA-GAAAGATTTTTTC--AACATGTTTCTCGAGACAAG-CATTCAATTATAGTCTGTTT
********* *
1944 TAATAAAAAATATA-ANNNNNNNNNNCTTAAAATCGATTATGAGA
126 TAATAAAAAATATAGA-AAAATTTAACTTAAAATCAATTATGAGA
* * * *
1988 TTATAAAATAATTTAAAGTGATTAATAAGGCTTGTGAAAGAATGGGTGACTATAAATGGACTTTT
1 TTATAAAATAATTTAAAGAGAGTAATAAGGCTTTTGAAAGAGTGGGTGACTATAAATGGACTTTT
* * * *
2053 CTTCTCAATGAAAGGTTTTTTCAACATGTTTCTCGAGGCAAGCATTCAATTATAGTCTGTTTGAG
66 CTTC-CAA-GAAAGATTTTTTCAACATGTTTCTCGAGACAAGCATTCAATTATAGTCTGTTTTAA
* *
2118 TAAAAAATGTAGAAAAATTTAACTTAAAATCAATTATGAGC
129 TAAAAAATATAGAAAAATTTAACTTAAAATCAATTATGAGA
* * * *
2159 TTATAAAACAATTTAAAGAGAGTAATAAGGTTTTTG-AAGCAGTAGGTGACTCTAAATGGACTTT
1 TTATAAAATAATTTAAAGAGAGTAATAAGGCTTTTGAAAG-AGTGGGTGACTATAAATGGACTTT
* * * * *
2223 TCTTAGCAAGAAATATCTTTTTCTACATGTTTCTTGAGACAAGCATTCAATTATAGTCTGATTTA
65 TCTT-CCAAGAAAGAT-TTTTTCAACATGTTTCTCGAGACAAGCATTCAATTATAGTCTGTTTTA
* * * * *
2288 ATTAAACATGTA-AACAAATTCAACTTAAAATCAATTATGAGT
128 ATAAAAAATATAGAA-AAATTTAACTTAAAATCAATTATGAGA
** ********** * * * *
2330 TTATAAAACCANNNNNNNNNNGTAATAAGGCTTTCGAAGGAATGGGTGGCTATAAATGGACTTTT
1 TTATAAAATAATTTAAAGAGAGTAATAAGGCTTTTGAAAGAGTGGGTGACTATAAATGGACTTTT
** * ** ** * * ** **
2395 CTTGTGAATGAATGCCTTTTTCTTCATATTTTTTAAG-GTAGACATTCAATTATAGTCTGTTTTA
66 CTT-CCAA-GAAAGATTTTTTCAACATGTTTCTCGAGACAAG-CATTCAATTATAGTCTGTTTTA
* * * * ********** *
2459 ACAAAAGATGTAAAAAAANNNNNNNNNNAATCATTTATGAGA
128 ATAAAAAATATAGAAAAATTTAACTTAAAATCAATTATGAGA
* * * * * *
2501 TTATAAAACAATTTAAAGCA-AGTAATAAGTCTTTTAAAAGAATAGGTGACTAT-AATGGGTCTT
1 TTATAAAATAATTTAAAG-AGAGTAATAAGGCTTTTGAAAGAGTGGGTGACTATAAAT-GGACTT
* * ** * * * *
2564 TTCTTACCAACGAATG-TGTTTCTCTTCAGGTTTCTCTAAGTA-AA-CATTTAATTATAGTCTAT
64 TTCTT-CCAA-GAAAGAT-TTTTTCAACATGTTTCTC-GAG-ACAAGCATTCAATTATAGTCTGT
** * * * *
2626 TTTAACCAAAAATATAAAAAAATCTAACTTAAAATAAATTATAAGA
124 TTTAATAAAAAATATAGAAAAATTTAACTTAAAATCAATTATGAGA
********** * * * *
2672 TTATAAAACNNNNNNNNNNA-AGTAATAAGGCTTTCGAAGGAATGGGTGACTCTAAATGGACTTT
1 TTATAAAA-TAATTTAAAGAGAGTAATAAGGCTTTTGAAAGAGTGGGTGACTATAAATGGACTTT
* * * * *
2736 TCTTCCCAATGAATGGCTTTTTCTCCACA--TTTCTTGAGACAAGCAATCAATTATAGTCTGTTT
65 TCTT-CCAA-GAA-AGATTTTT-TCAACATGTTTCTCGAGACAAGCATTCAATTATAGTCTGTTT
* * * * * * *
2799 TAGTGAAAAATA-AAAAAAAATCAACTTAAAATTAATTATGAGT
126 TAATAAAAAATATAGAAAAATTTAACTTAAAATCAATTATGAGA
*
2842 TTATAAAACAATTTAAAG
1 TTATAAAATAATTTAAAG
2860 TGAGNNNNNN
Statistics
Matches: 656, Mismatches: 190, Indels: 54
0.73 0.21 0.06
Matches are distributed among these distances:
169 5 0.01
170 56 0.09
171 569 0.87
172 20 0.03
173 6 0.01
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.34
Consensus pattern (169 bp):
TTATAAAATAATTTAAAGAGAGTAATAAGGCTTTTGAAAGAGTGGGTGACTATAAATGGACTTTT
CTTCCAAGAAAGATTTTTTCAACATGTTTCTCGAGACAAGCATTCAATTATAGTCTGTTTTAATA
AAAAATATAGAAAAATTTAACTTAAAATCAATTATGAGA
Found at i:2443 original size:342 final size:334
Alignment explanation
Indices: 2010--2859 Score: 770
Period size: 342 Copynumber: 2.5 Consensus size: 334
2000 TTAAAGTGAT
* * *
2010 TAATAAGGCTTGT-GAAAGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAAAGGTTTTTT
1 TAATAAGGCTT-TCGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAATGGCTTTTT
* * * * * * *
2074 CAACATGTTTCTCGAGGCAAGCATTCAATTATAGTCTGTTTGAGTAAAAAATGTAGAAAAATTTA
65 CTACATATTTCTTGAGGCAAGCATTCAATTATAGTCTGTTTTAGTAAAAAATGTAAAAAAAATCA
* * *
2139 ACTTAAAATCAATTATGAGCTTATAAAACAATTTAAAG-AGAGTAATAAGGT-TTTT-GAAGCAG
130 ACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCA-AGTAATAA-GTCTTTTAAAAG-AA
* * * * *
2201 TAGGTGACTCTAAAT-GGACTTTTCTTAGCAA-GAAATATCTTTTTCTACATGTTTCT-TGAG-A
192 TAGGTGACTAT-AATGGGACTTTTCTTACCAACG-AATATCTTTCTCTACAGGTTTCTCTAAGTA
** * * * *
2262 CAAGCATTCAATTATAGTCTGA-TTTAATTAAACATGTAAACAAAT-TCAACTTAAAATCAATTA
255 -AA-CATTCAATTATAGTCT-ATTTTAACCAAAAATATAAAAAAATCT-AACTTAAAATAAATTA
* * **
2325 TGAGTTTATAAAACCANNNNNNNNNNG
316 TAAGATTATAAAACCA--------AAG
* * * *
2352 TAATAAGGCTTTCGAAGGAATGGGTGGCTATAAATGGACTTTTCTTGTGAATGAATGCCTTTTTC
1 TAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAATGGCTTTTTC
* * * * ** * ****
2417 TTCATATTTTTTAAGG-TAGACATTCAATTATAGTCTGTTTTAACAAAAGATGTAAAAAAANNNN
66 TACATATTTCTTGAGGCAAG-CATTCAATTATAGTCTGTTTTAGTAAAAAATGTAAAAAAAATCA
****** *
2481 NNNNNNAATCATTTATGAGATTATAAAACAATTTAAAGCAAGTAATAAGTCTTTTAAAAGAATAG
130 ACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCAAGTAATAAGTCTTTTAAAAGAATAG
* * * *
2546 GTGACTATAATGGGTCTTTTCTTACCAACGAATGTGTTTCTCTTCAGGTTTCTCTAAGTAAACAT
195 GTGACTATAATGGGACTTTTCTTACCAACGAATATCTTTCTCTACAGGTTTCTCTAAGTAAACAT
*
2611 TTAATTATAGTCTATTTTAACCAAAAATATAAAAAAATCTAACTTAAAATAAATTATAAGATTAT
260 TCAATTATAGTCTATTTTAACCAAAAATATAAAAAAATCTAACTTAAAATAAATTATAAGATTAT
**
2676 AAAACNNNNNNNNNNAAG
325 AAAAC--------CAAAG
* *
2694 TAATAAGGCTTTCGAAGGAATGGGTGACTCTAAATGGACTTTTCTTCCCAATGAATGGCTTTTTC
1 TAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAATGGCTTTTTC
* * * * * *
2759 TCCACATTTCTTGAGACAAGCAATCAATTATAGTCTGTTTTAGTGAAAAAT-AAAAAAAAATCAA
66 TACATATTTCTTGAGGCAAGCATTCAATTATAGTCTGTTTTAGTAAAAAATGTAAAAAAAATCAA
* *
2823 CTTAAAATTAATTATGAGTTTATAAAACAATTTAAAG
131 CTTAAAATCAATTATGAGATTATAAAACAATTTAAAG
2860 TGAGNNNNNN
Statistics
Matches: 402, Mismatches: 86, Indels: 41
0.76 0.16 0.08
Matches are distributed among these distances:
341 45 0.11
342 343 0.85
343 13 0.03
344 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.34
Consensus pattern (334 bp):
TAATAAGGCTTTCGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAATGGCTTTTTC
TACATATTTCTTGAGGCAAGCATTCAATTATAGTCTGTTTTAGTAAAAAATGTAAAAAAAATCAA
CTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCAAGTAATAAGTCTTTTAAAAGAATAGG
TGACTATAATGGGACTTTTCTTACCAACGAATATCTTTCTCTACAGGTTTCTCTAAGTAAACATT
CAATTATAGTCTATTTTAACCAAAAATATAAAAAAATCTAACTTAAAATAAATTATAAGATTATA
AAACCAAAG
Found at i:4290 original size:170 final size:170
Alignment explanation
Indices: 3985--4368 Score: 421
Period size: 170 Copynumber: 2.3 Consensus size: 170
3975 TTTCTCGAGA
* * *
3985 TAGACATTCAATTATAGTCTATTTTAATTAAAAATATAAAAAAATATAACTTTAAATCAATTATG
1 TAGACATTCAATTATAGTCTGTTTTAACTAAAAATAT-AAAAAATATAACTTAAAATCAATTATG
* * * * * *
4050 AGTTTATAAAAGAATTTAAAGCATGTAGTAAGGCTTTTCAAGGAACGGATGACTATAAATGGATT
65 AGATTATAAAAAAATTTAAAGCAAGTAATAAGGCTTTTCAAGGAACGGATGACTATAAATAGACT
*
4115 TTTCTTGCTAACAAATGCATTTTCCTTCATGTTTATCTAAG
130 TTTCTTGCCAACAAATGCATTTTCCTTCATGTTTATCTAAG
** * * *
4156 TAGATTTTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAAAT-TCAACTTAAAATTAGTTATG
1 TAGACATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAAATAT-AACTTAAAATCAATTATG
*********
4220 AGATTATAAAAAAATTTAAAGCAAGTAATAAGGCTTTNNNNNNNNNNGG-TGACTATAAATAGAC
65 AGATTATAAAAAAATTTAAAGCAAGTAATAAGGCTTT-TCAAGGAACGGATGACTATAAATAGAC
* *** * * *
4284 TTTTCTTTCCAATGGATGCCTTTTTCTTCATGTTTCTCTAAG
129 TTTTCTTGCCAACAAATGCATTTTCCTTCATGTTTATCTAAG
* * *
4326 TAGACATTGAATTATAATCTGTTTTAACCAAAAATATAAAAAA
1 TAGACATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAAA
4369 NNNNNNNNNN
Statistics
Matches: 174, Mismatches: 37, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
169 1 0.01
170 139 0.80
171 34 0.20
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.37
Consensus pattern (170 bp):
TAGACATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAAATATAACTTAAAATCAATTATGA
GATTATAAAAAAATTTAAAGCAAGTAATAAGGCTTTTCAAGGAACGGATGACTATAAATAGACTT
TTCTTGCCAACAAATGCATTTTCCTTCATGTTTATCTAAG
Found at i:6864 original size:22 final size:22
Alignment explanation
Indices: 6833--6886 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
6823 CTCATAATTG
*
6833 ATTTTAAGTTGAATTTTTTCAC
1 ATTTTTAGTTGAATTTTTTCAC
6855 ATTTTTAGTTGAATTTTTTCAC
1 ATTTTTAGTTGAATTTTTTCAC
6877 ATTTTTAGTT
1 ATTTTTAGTT
6887 AAAATAGGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.24, C:0.07, G:0.09, T:0.59
Consensus pattern (22 bp):
ATTTTTAGTTGAATTTTTTCAC
Found at i:14647 original size:170 final size:170
Alignment explanation
Indices: 14350--14739 Score: 536
Period size: 170 Copynumber: 2.3 Consensus size: 170
14340 NNNNNNNNNN
* * * *
14350 CGAGTAATAAGGCTTTTGAAGGAATG-GCTGACTATAAATAGACTTTTCTTGCCAGTGGATGCCT
1 CGAGTAATAAGGCTTTTGAAGGAATGAG-TGACTATAAA-GGACTTTTCTTGCAAATGAATGCCT
*
14414 TTTGCTTCACGTTTCTCTAAGTACGCATTGAATTATAGTCTGTTTTAACAAAAAATATAAAAAAA
64 TTTGCTTCACGTTTCTCTAAGTACGCATTGAAATATAGTCTGTTTTAACAAAAAATATAAAAAAA
* * *
14479 TTTAACTTAAAATCAATTATGAGATTATAAAATAATTTAAAG
129 TTAAACTTAAAATCAATTATGAGATTATAAAACAATATAAAG
*
14521 CGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAAGGACTTTTCTTGCAAATGAAT-CTGTT
1 CGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAAGGACTTTTCTTGCAAATGAATGC-CTT
* * * * *
14585 TTTCTTCATGTTTCTCTAAGTA-GACATTGAAATATAGTCTGTTTTAGCCAAAAATGTAAAAAAA
65 TTGCTTCACGTTTCTCTAAGTACG-CATTGAAATATAGTCTGTTTTAACAAAAAATATAAAAAAA
*
14649 TTAAACTTAAAATCAATTATGGGATTATAAAACAATATAAAG
129 TTAAACTTAAAATCAATTATGAGATTATAAAACAATATAAAG
** *
14691 CGAGTAATAAAACTTTTGAAGGAAT-AGGTAACTATAAAGAGACTTTTCT
1 CGAGTAATAAGGCTTTTGAAGGAATGA-GTGACTATAAAG-GACTTTTCT
14740 ATCCAACGAA
Statistics
Matches: 196, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
169 3 0.02
170 147 0.75
171 45 0.23
172 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (170 bp):
CGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAAGGACTTTTCTTGCAAATGAATGCCTTT
TGCTTCACGTTTCTCTAAGTACGCATTGAAATATAGTCTGTTTTAACAAAAAATATAAAAAAATT
AAACTTAAAATCAATTATGAGATTATAAAACAATATAAAG
Found at i:15294 original size:171 final size:171
Alignment explanation
Indices: 14982--15359 Score: 506
Period size: 171 Copynumber: 2.2 Consensus size: 171
14972 NNNNNNNNNN
* * * * *
14982 AGATTATAAAACAATTTAAAGCGAGTAATGAGGCTTTTGAAGAAATGGGTGACTCTAAATGGACT
1 AGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATAGATGACTATAAATGAACT
** * * *
15047 TTTTTTCTCAATGAATGGCTTTTTCTACAAGTTTCTTGAGGCAAGCATTCAATTATAGTCTGTTT
66 TTTTTAATCAATGAATGGCTTTTTCTACAAGTTTCTAGAGACAAACATTCAATTATAGTCTGTTT
* * *
15112 TAATAAAAAATATAAAAACATTTAACTTAAAATCAATTATG
131 TAACAAAAAATATAAAAACATTGAACATAAAATCAATTATG
* * * ** * **
15153 GGTTTATATAACCGTTTAAAACGAGTAATAAGGCTTTTGAAGGTATAGATGACTATAAATGAACT
1 AGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATAGATGACTATAAATGAACT
* * * *
15218 TTTTTAATCAATGAAT-GCTTTTTTCTTCATGTTTCTAGAGATAAACATTCAATTATGGTCTGTT
66 TTTTTAATCAATGAATGGC-TTTTTCTACAAGTTTCTAGAGACAAACATTCAATTATAGTCTGTT
*
15282 TTAACCAAAAATATAAAAACATTGAACATAAAATCAATTATG
130 TTAACAAAAAATATAAAAACATTGAACATAAAATCAATTATG
15324 AGATTATAAAACAATTTAAAGCGAGTAATAAGGCTT
1 AGATTATAAAACAATTTAAAGCGAGTAATAAGGCTT
15360 NNNNNNNNNN
Statistics
Matches: 174, Mismatches: 32, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
170 2 0.01
171 172 0.99
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (171 bp):
AGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATAGATGACTATAAATGAACT
TTTTTAATCAATGAATGGCTTTTTCTACAAGTTTCTAGAGACAAACATTCAATTATAGTCTGTTT
TAACAAAAAATATAAAAACATTGAACATAAAATCAATTATG
Found at i:17642 original size:23 final size:24
Alignment explanation
Indices: 17616--17664 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
17606 TTATACTCTG
17616 TTTTAATTAAAAAT-ATTAAAAAA
1 TTTTAATTAAAAATAATTAAAAAA
* * *
17639 TTTTACTTAAAATTAATTATAAAA
1 TTTTAATTAAAAATAATTAAAAAA
17663 TT
1 TT
17665 ATANNNNNNN
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTTAATTAAAAATAATTAAAAAA
Found at i:19707 original size:172 final size:171
Alignment explanation
Indices: 19365--19800 Score: 425
Period size: 172 Copynumber: 2.5 Consensus size: 171
19355 NNNNNTTTTA
* * *
19365 TCACGTTTCACAAGGTAGACATTCAATAATAGTCTATTTTAACTAAAAAATTTAAAAAAGTCAAC
1 TCACGTTTCACAAGGAAGACATTCAATAATAGTCTAGTTTAACTAAAAAATGTAAAAAAGTCAAC
** * * ***
19430 TTAAAATATATTATGACGTTATAAAACAATTTAAAGTGAGTAATGAGGCTTTTGAAGGAATGGGT
66 TTAAAATATATTATGAAATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAAAT
* *
19495 GACTAAAAAAGGACTTTTCTTGCCAATAAATGCTTTTTTCT
131 GACTAAAAAAGGACTTTTCTTGCCAACAAATGCATTTTTCT
* * * *
19536 TCACGTTTCTCAAGGAA-AGCATTCAATTATAGTCTAGTTTAACT-AAAAATGTAAAATAATTTA
1 TCACGTTTCACAAGGAAGA-CATTCAATAATAGTCTAGTTTAACTAAAAAATGTAAAA-AAGTCA
* *
19599 ACTTAAAATCA-ATTTATGAAATTATAAAATAATTTAAAGCGTGTAATAAGGCTTTTGAAGGAAT
64 ACTTAAAAT-ATA-TTATGAAATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAAT
* * * * * *
19663 AAATGAGTATAAAGGGGCTTTTCTTGTCAACGAATGCATTTTTCT
127 AAATGACTAAAAAAGGACTTTTCTTGCCAACAAATGCATTTTTCT
*** * * * * * * * *
19708 TCATACTTCACTAA-GTAGACATTTAATTATAGT-TTGTTTTACCAAAAAAATATAAAAAAACTC
1 TCACGTTTCAC-AAGGAAGACATTCAATAATAGTCTAG-TTTAACTAAAAAATGT-AAAAAAGTC
**
19771 AACTTAAAATCA-ATTATGGGATTATAAAAC
63 AACTTAAAAT-ATATTATGAAATTATAAAAC
19801 NNNNNNNNNN
Statistics
Matches: 217, Mismatches: 39, Indels: 17
0.79 0.14 0.06
Matches are distributed among these distances:
170 12 0.06
171 54 0.25
172 121 0.56
173 26 0.12
174 4 0.02
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.34
Consensus pattern (171 bp):
TCACGTTTCACAAGGAAGACATTCAATAATAGTCTAGTTTAACTAAAAAATGTAAAAAAGTCAAC
TTAAAATATATTATGAAATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAAAT
GACTAAAAAAGGACTTTTCTTGCCAACAAATGCATTTTTCT
Found at i:24515 original size:171 final size:169
Alignment explanation
Indices: 23960--25177 Score: 904
Period size: 171 Copynumber: 7.1 Consensus size: 169
23950 NNNNNNCTCA
* * * * *
23960 CTTTAAATTGTTTTATAAACTCATAATTAATTTTAAGTTGATTTTTTTTTCATTTTTCACTAAAA
1 CTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTCATTAAAA
* * * *
24025 CAGACTATAATTGATTGCTTACCTCAAGAAATGTGGAGAAAAA-GTCATTCATTTAG-AAGAAAA
66 CAGACTATAATTGAATGC-TACCTTAAGAAACGTGAAGAAAAAGGT-ATTCA-TT-GCAAGAAAA
* * * *
24088 GTCCATTTAGAGTCACCCATTCCTTCGAAAGCTTTATTACTTG
127 GTCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACTTG
* * * **
24131 CTTTAAATGGTTTTATAATCTTATAATTTA-TTTAAGTT-AGATTTTTTTACATTTTTGGTTAAA
1 CTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGA-ATTTTTTTACATTTTTCATTAAA
* * * * * *
24194 ATAGACTATAATTAAATGTCTA-CTTAGAGAAACGTGAAGAGAAATGCATTCGTTGGCAAGAAAA
65 ACAGACTATAATTGAATG-CTACCTTA-AGAAACGTGAAGAAAAAGGTATTCATT-GCAAGAAAA
* * * *
24258 GTCCCA-TTATAGTCAACAATTCTTTTAAAAGCTTTATTACTTG
127 GT-CCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACTTG
*********** *
24301 CTTTAAATTGTTTTATAATCTCATAAANNNNNNNNNNTTGAATTTTTTTACATCTTTT-GTTAAA
1 CTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAT-TTTTCATTAAA
* **
24365 ACAGACTATAACTGAATGTCTACCTTAAGAAATATGAAGAAAAAGGTATTCATTCGCAAGAAAAG
65 ACAGACTATAATTGAATG-CTACCTTAAGAAACGTGAAGAAAAAGGTATTCATT-GCAAGAAAAG
* * *********
24430 TCCATTTATAGCCACCCATTCCTTCAAAAGCCTNNNNNNNNN
128 TCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACTTG
* * * * *
24472 NTTTAAATGGTTTTATAAACTCATAATTGATTTTAAGTTGAATTTGTTTACATTTTTCATTAAAT
1 CTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTCATTAAAA
* * * * **
24537 CAGACTATGATTGAATGCT-CGTCTCAAGAAACGTGTAGAAAAAGATATTTGTTGTCAAGAAAAG
66 CAGACTATAATTGAATGCTAC--CTTAAGAAACGTGAAGAAAAAGGTATTCATTG-CAAGAAAAG
* * *
24601 TCCATTTAGAGTCACCTACTCTTTCAAAAGCCTTATTACTCT-
128 TCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACT-TG
* * * * * * *
24643 CTTTAAATTGTTTTATAATCTCAGAATTGGTTTTAAGTTAAATTCTTTTACATTTTTTACTCAAA
1 CTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTCATTAAAA
* * * * *
24708 CAGACTATAATTGAATGCTTGCCTTGAGAAACATGTAGAAAAAGCCT-TTCA-T-CAAGAAGAAA
66 CAGACTATAATTGAATGC-TACCTTAAGAAACGTGAAGAAAAAG-GTATTCATTGCAAG-A-AAA
* *
24770 GTCCATTTATAGTCACCCATTCTTTCACAAGCCTTATTAATTG
127 GTCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACTTG
* * ********* * *
24813 TTTTAAATTGTTTTATAATCTCATAATCGATTTTNNNNNNNNNNTTTTTTATATTTTTTATTAAA
1 CTTTAAATTGTTTTATAATCTCATAATTGATTTT-AAGTTGAATTTTTTTACATTTTTCATTAAA
* * * * * * *
24878 ATAGACTATAATTCAATGTCTA-CTTAGAAAAATGTGAAGAAAAACGCATTCGTTGGCAAGAAAA
65 ACAGACTATAATTGAATG-CTACCTTA-AGAAACGTGAAGAAAAAGGTATTCATT-GCAAGAAAA
* * * **
24942 GTCCCTTTATAATCACCCATTCCTTCAAAAGCCTTATTACTNN
127 GTCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACTTG
******** * *
24985 NNNNNNNNTATTTTATAATCTCATTATTGA-TTTAAGTTGAATTTTTTTACATTTTT-AGTTAAA
1 CTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTCA-TTAAA
* * * * * * *
25048 ACTGACTATAATTCAATGTCTA-CTTAGAGAAGCGTTAAGAAAAAAGCATCCATTGGCAAGAAAA
65 ACAGACTATAATTGAATG-CTACCTTA-AGAAACGTGAAGAAAAAGGTATTCATT-GCAAGAAAA
* * *
25112 ATCCATTTATATTCACCCATT-TCTTCAAAAGCCTTATTACTCG
127 GTCCATTTATAGTCACCCATTCT-TTCAAAAGCCTTATTACTTG
*
25155 CTTTAAATTATTTTATAATCTCA
1 CTTTAAATTGTTTTATAATCTCA
25178 NNNNNNNNNN
Statistics
Matches: 811, Mismatches: 205, Indels: 63
0.75 0.19 0.06
Matches are distributed among these distances:
168 4 0.00
169 11 0.01
170 332 0.41
171 387 0.48
172 71 0.09
173 2 0.00
174 4 0.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.38
Consensus pattern (169 bp):
CTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTCATTAAAA
CAGACTATAATTGAATGCTACCTTAAGAAACGTGAAGAAAAAGGTATTCATTGCAAGAAAAGTCC
ATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACTTG
Found at i:26399 original size:171 final size:170
Alignment explanation
Indices: 26094--26556 Score: 430
Period size: 171 Copynumber: 2.7 Consensus size: 170
26084 NNNNNNNNNN
*
26094 TTTTTTACATTTTTAATTAAAATAGACTATAATTGAATGTCTACCTCAAGAAACATGACGGAAAA
1 TTTTTTACATTTTTAATTAAAATAGACTATAATTGAATGTCTACCTCAAAAAACATGACGGAAAA
* * *** * * *
26159 GGCATTGATTTCCAAGAAAAGTCCATTTATAGTCACCTATTCCTTGAAAAGCCTTATTATTCACT
66 GCCATTCATTGAAAAGAAAAGCCCATTTATAGTCACCCATTCCTTGAAAAGCCTTATTACTCACT
26224 TTAAATTATTTTATAAACTCATAATTGATTTTAAGTTAAA
131 TTAAATTATTTTATAAACTCATAATTGATTTTAAGTTAAA
* * * **
26264 TTTTTTAATATTTTTCATTAAAATAGA-TAATAATTGAATGTCT-GCTCTAGAAAAACATTTC-G
1 TTTTTT-ACATTTTTAATTAAAATAGACT-ATAATTGAATGTCTACCTC-A-AAAAACATGACGG
**
26326 AAAAGCCATTCATTGAAAAGAAAAGCCCATTTATAGTCACCCATTCCTTTCAAAGCCTTATTACT
62 AAAAGCCATTCATTGAAAAGAAAAGCCCATTTATAGTCACCCATTCCTTGAAAAGCCTTATTACT
* ********** * *
26391 CGCTTTAAATTNNNNNNNNNNCTCATAATTGATTTTATGTTCAA
127 CACTTTAAATTATTTTATAAACTCATAATTGATTTTAAGTTAAA
* ** * * ** ** * *
26435 TGGTTTTACATTTTTGGTTAAAACAGACCATAATTGAATGTCTACCTCAAGCAATGTGAAGAAAA
1 T-TTTTTACATTTTTAATTAAAATAGACTATAATTGAATGTCTACCTCAAAAAACATGACGGAAA
* * * * * *
26500 AGTCATTCATTGATTAA-AAAAGTCCATTTATAGTCACCTATACCTTCAAAAGCCTTA
65 AGCCATTCATTGA-AAAGAAAAGCCCATTTATAGTCACCCATTCCTTGAAAAGCCTTA
26557 NNNNNNNNNN
Statistics
Matches: 233, Mismatches: 51, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
170 14 0.06
171 202 0.87
172 17 0.07
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.36
Consensus pattern (170 bp):
TTTTTTACATTTTTAATTAAAATAGACTATAATTGAATGTCTACCTCAAAAAACATGACGGAAAA
GCCATTCATTGAAAAGAAAAGCCCATTTATAGTCACCCATTCCTTGAAAAGCCTTATTACTCACT
TTAAATTATTTTATAAACTCATAATTGATTTTAAGTTAAA
Found at i:27674 original size:341 final size:332
Alignment explanation
Indices: 27064--27689 Score: 749
Period size: 341 Copynumber: 1.9 Consensus size: 332
27054 NNNNNNNNNC
* *
27064 AGACTATAATTGAATGTCTACCTTGAGAAAGATGAAGAAAAAGGCATTCATTGACAAAAAAAGTT
1 AGACTATAAATGAATGTCTACCTTGAGAAAGATG-AGAAAAAGGCATTCATTGACAAAAAAAGTC
**
27129 CATTTATAGTCACTTATGCTTTCAAAAACCTTATTACTCACTTTAAATAGTGGTATAAACTCATA
65 CATTTATAGTCACCCATGCTTTCAAAAACCTTATTACTCACTTTAAATAGTGGTATAAACTCATA
* * * *
27194 ATTGATTTTAAGTTGAATTTGTTTACTTTTTTTTATTAAAACAGACTATAATTGAATGCTTGCCT
130 ATTGATTTTAAGTTGAATTTGTTTACTATTGTTTATTAAAACAGACTATAATTGAATGCCTACCT
* * *
27259 CAAGAAACATGCAGAAAAATCCATTCATTGAGAAAAAAAGTACATTTAGAGCCACTCATTCCTTC
195 CAAGAAACATGCAGAAAAAGCCATTCATTGAGAAAAAAAGTACATTTAGAGCAACCCATTCCTTC
27324 AAAAGCCTTATTACTCACTTTAAATTGTNNNNNNNNNNCATAATTGATATTAAGTTGAATGTTTT
260 AAAAGCCTTATTACTCACTTTAAATTGT----------CATAATTGATATTAAGTTGAATGTTTT
27389 TACATTTTTGGTTAAAAT
315 TACATTTTTGGTTAAAAT
* * * *
27407 AGACTATAAATGAATGTCTACCTTGTGAAATG-TG-GTAAAAAGGTATTCATTGGCAAGAAAAGT
1 AGACTATAAATGAATGTCTACCTTGAGAAA-GATGAG-AAAAAGGCATTCATTGACAAAAAAAGT
* * * * * ** * ** * *
27470 CCATTTATAGTTACCCATTCTTTCGAAAGCTTTATTACTTGCTTTAAATGGTTTTATAATCTGAT
64 CCATTTATAGTCACCCATGCTTTCAAAAACCTTATTACTCACTTTAAATAGTGGTATAAACTCAT
* *
27535 AATTGATTTTGAGTTGAA-TTGTTTTAC-ATTGTTTATTAAAACAGACTATAATTGAATGCCTAT
129 AATTGATTTTAAGTTGAATTTG-TTTACTATTGTTTATTAAAACAGACTATAATTGAATGCCTAC
* * * * * *
27598 CTCAGGAAACGTGTAGCAAAAGCCATTCATTGAGAAGAAAAA-TCCATTTAGAGTAACCCATTCC
193 CTCAAGAAACATGCAGAAAAAGCCATTCATTGAGAA-AAAAAGTACATTTAGAGCAACCCATTCC
* *
27662 TTCAAAAGCCTTATTTCTCTCTTTAAAT
257 TTCAAAAGCCTTATTACTCACTTTAAAT
27690 GGTTTTATAA
Statistics
Matches: 242, Mismatches: 37, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
341 110 0.45
342 101 0.42
343 30 0.12
344 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.36
Consensus pattern (332 bp):
AGACTATAAATGAATGTCTACCTTGAGAAAGATGAGAAAAAGGCATTCATTGACAAAAAAAGTCC
ATTTATAGTCACCCATGCTTTCAAAAACCTTATTACTCACTTTAAATAGTGGTATAAACTCATAA
TTGATTTTAAGTTGAATTTGTTTACTATTGTTTATTAAAACAGACTATAATTGAATGCCTACCTC
AAGAAACATGCAGAAAAAGCCATTCATTGAGAAAAAAAGTACATTTAGAGCAACCCATTCCTTCA
AAAGCCTTATTACTCACTTTAAATTGTCATAATTGATATTAAGTTGAATGTTTTTACATTTTTGG
TTAAAAT
Found at i:27688 original size:171 final size:170
Alignment explanation
Indices: 26914--28216 Score: 856
Period size: 171 Copynumber: 7.6 Consensus size: 170
26904 NNNATGCTTG
* * * * ** *
26914 CCTCAAGAAACTTGCAGAAAAAGCCATTCATTGAGAA-AAAAGTTTATTTAAAGTCACCCATTCC
1 CCTCAGGAAACGTGAAGAAAAAGCCATTCATTGAGAAGAAAAATCCATTTATAGTCACCCATTCC
* * * *
26978 TTCAAAAGCCTCATTACTCGCTTTAAATTGTTTTATAATCTTATAATTGATTTTAAGTT-AATTT
66 TTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TT
**********
27042 TTTTTACATTNNNNNNNNNNNCAGACTATAATTGAATGTCTA
130 TTTTTACATT-TTTATTAAAACAGACTATAATTGAATGTCTA
* * * * **
27084 CCT-TGAGAAA-GATGAAGAAAAAGGCATTCATTGACAA-AAAAAGTTCATTTATAGTCACTTAT
1 CCTCAG-GAAACG-TGAAGAAAAAGCCATTCATTGAGAAGAAAAA-TCCATTTATAGTCACCCAT
* * * * * ** *
27146 GCTTTCAAAAACCTTATTACTCACTTTAAATAGTGGTATAAACTCATAATTGATTTTAAGTTGAA
63 TCCTTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA
* * *
27211 TTTGTTTACTTTTTTTTATTAAAACAGACTATAATTGAATG-CTTG
128 TTTTTTTAC--ATTTTTATTAAAACAGACTATAATTGAATGTC-TA
* * * * * * * *
27256 CCTCAAGAAACATGCAGAAAAATCCATTCATTGAGAA-AAAAAGTACATTTAGAGCCACTCATTC
1 CCTCAGGAAACGTGAAGAAAAAGCCATTCATTGAGAAGAAAAA-TCCATTTATAGTCACCCATTC
* * ********** * *
27320 CTTCAAAAGCCTTATTACTCACTTTAAATTGTNNNNNNNNNNCATAATTGATATTAAGTTGAATG
65 CTTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT
* * *
27385 TTTTTACATTTTTGGTTAAAATAGACTATAAATGAATGTCTA
130 TTTTTACATTTTT-ATTAAAACAGACTATAATTGAATGTCTA
* * ** * *
27427 CCT-TGTGAAATGTG--GTAAAAAGGTATTCATTG-GCAAGAAAAGTCCATTTATAGTTACCCAT
1 CCTCAG-GAAACGTGAAG-AAAAAGCCATTCATTGAG-AAGAAAAATCCATTTATAGTCACCCAT
* * * * *
27488 TCTTTCGAAAGCTTTATTACT-TGCTTTAAATGGTTTTATAATCTGATAATTGATTTTGAGTTGA
63 TCCTTCAAAAGCCTTATTACTCT-CTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGA
* *
27552 ATTGTTTTACATTGTTTATTAAAACAGACTATAATTGAATGCCTA
127 ATTTTTTTACATT-TTTATTAAAACAGACTATAATTGAATGTCTA
* * * * *
27597 TCTCAGGAAACGTGTAGCAAAAGCCATTCATTGAGAAGAAAAATCCATTTAGAGTAACCCATTCC
1 CCTCAGGAAACGTGAAGAAAAAGCCATTCATTGAGAAGAAAAATCCATTTATAGTCACCCATTCC
* **********
27662 TTCAAAAGCCTTATTTCTCTCTTTAAATGGTTTTATAATCTCATAANNNNNNNNNNGTTGAATTT
66 TTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTT
* *
27727 TTTTACATTTTTGGTTAAAACAGACTATAATTAAATGTCTA
131 TTTTACATTTTT-ATTAAAACAGACTATAATTGAATGTCTA
* * * ** * *
27768 -CTTAGAGAAACGTGAAGTAAAA-CGTATTCCCT-AGCAAGAAAAGTCCCA-TTATAGTCACTCA
1 CCTCAG-GAAACGTGAAGAAAAAGC-CATTCATTGAG-AAGAAAAAT-CCATTTATAGTCACCCA
* * ******************
27829 TTCCTTTAAAAGCCTTATTACT-TGCTTTAAATTGTTTTATANNNNNNNNNNNNNNNNNNAGTTG
62 TTCCTTCAAAAGCCTTATTACTCT-CTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG
27893 AATTTTTTTACATTTTTAGTTAAAACAGACTATAATTGAATGTCTA
126 AATTTTTTTACATTTTTA-TTAAAACAGACTATAATTGAATGTCTA
* * * * * * *
27939 CCTAAAGAAA-GATGAAGGACAATG-CATTCATTTG-CAAG-AAAAGCTCATTTATAGCCACCCA
1 CCTCAGGAAACG-TGAA-GAAAAAGCCATTCA-TTGAGAAGAAAAATC-CATTTATAGTCACCCA
* * * * * *
28000 TTCCTTTAAAAGCCTCATTTCT-TGCTTTAAATGGTTTTATAAACTTATAATTGGTTTTAAGTTG
62 TTCCTTCAAAAGCCTTATTACTCT-CTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG
* * *
28064 AATTTTTTTACATTTTTCATTGATACAGACTATAATTGAATG-CAGA
126 AATTTTTTTACATTTTT-ATTAAAACAGACTATAATTGAATGTC-TA
* * * *
28110 TCTCAAGAAACGT-ATAGAAAAAGCCATTCATTGAGAAGAAAAGTTCATTTAGT-GTCACCCATT
1 CCTCAGGAAACGTGA-AGAAAAAGCCATTCATTGAGAAGAAAAATCCATTTA-TAGTCACCCATT
* * *
28173 TCTTCAAAAGTCTTATTACTCGCTTTAAATGGTTTTATAATCTC
64 CCTTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCTC
28217 NNNNNNNNNN
Statistics
Matches: 876, Mismatches: 211, Indels: 91
0.74 0.18 0.08
Matches are distributed among these distances:
169 3 0.00
170 183 0.21
171 542 0.62
172 146 0.17
173 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.36
Consensus pattern (170 bp):
CCTCAGGAAACGTGAAGAAAAAGCCATTCATTGAGAAGAAAAATCCATTTATAGTCACCCATTCC
TTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTT
TTTTACATTTTTATTAAAACAGACTATAATTGAATGTCTA
Done.