Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402097.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5192.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.25

Warning! 30 characters in sequence are not A, C, G, or T


Found at i:253 original size:18 final size:17

Alignment explanation


    Indices: 222--266  Score: 51
    Period size: 18  Copynumber: 2.8  Consensus size: 17

        212 TTGAAACTTA

                             
        222 AAGAAGAAGAAAAAGAT
          1 AAGAAGAAGAAAAAGAT

                      *       
        239 AAGAGAGAAGCAAAAGA-
          1 AAGA-AGAAGAAAAAGAT

                         
        256 AA-AA-AAGAAAA
          1 AAGAAGAAGAAAA

        267 GTATTGCTTT


Statistics
Matches: 25,  Mismatches: 2, Indels: 5
        0.78            0.06        0.16

Matches are distributed among these distances:
  14    6  0.24
  15    1  0.04
  16    1  0.04
  17    6  0.24
  18   11  0.44

ACGTcount: A:0.73, C:0.02, G:0.22, T:0.02


Consensus pattern (17 bp):   
AAGAAGAAGAAAAAGAT
Done.