Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402106.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_520.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2287
ACGTcount: A:0.19, C:0.06, G:0.07, T:0.19

Warning! 1121 characters in sequence are not A, C, G, or T


Found at i:1485 original size:171 final size:171

Alignment explanation


    Indices: 1255--1657  Score: 465
    Period size: 171  Copynumber: 2.4  Consensus size: 171

       1245 NNNNNNNNNN

                   *      *                  *                   *           
       1255 ATTCAACTTAAAATGAATTATGAGATTATAAAATCATTTAAAGTC-AGTAATATGGCTTTTGAAG
          1 ATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAG-CGAGTAATAAGGCTTTTGAAG

            *      *                *                       *                
       1319 GAAT-GGTGACTATAAATGGACTTTTCTTGCCAATAAATGTCTT-TTTGTTCACATTACTCGAGC
         65 AAATAGGAGACTATAAATGGACTTGTCTTGCCAATAAATG-CTTGTTTCTTCACATTACTCGAGC

                                 *           *   *        
       1382 TAGACAT-TCAATTATAAT-ATTCTTTAACCAATAATGTGAAAAAA
        129 TAGACATCT-AATTATAATCAGT-TTTAACCAAAAATAT-AAAAAA

               *      *        *                             *               
       1426 ATTGAACCTAGAATCAATTTTGAGATTATAAAACCATTTAAAGCGAGTACTAAGGCTTTTGAAGA
          1 ATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGA

                                        * *   *                **  *  *      
       1491 AATAGGAGACTATAAATGGACTTGTCTTTCTAATGAATGCTTGTTTCTTCATGTTTCTTGAGCTA
         66 AATAGGAGACTATAAATGGACTTGTCTTGCCAATAAATGCTTGTTTCTTCACATTACTCGAGCTA

            *       *     *                    *     
       1556 TACATCTATTTATAGTCAGTTTTAACCAAAAATATTAAAAA
        131 GACATCTAATTATAATCAGTTTTAACCAAAAATATAAAAAA

                  **                       *                             
       1597 ATTCAAGTTAAAATCAATTATGAGATTATAATACCATTTAAAGCGAGTAATAAGGCTTTTG
          1 ATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG

       1658 NNNNNNNNNN


Statistics
Matches: 194,  Mismatches: 33, Indels: 10
        0.82            0.14        0.04

Matches are distributed among these distances:
 170    1  0.01
 171  119  0.61
 172   71  0.37
 173    3  0.02

ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36


Consensus pattern (171 bp):   
ATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGA
AATAGGAGACTATAAATGGACTTGTCTTGCCAATAAATGCTTGTTTCTTCACATTACTCGAGCTA
GACATCTAATTATAATCAGTTTTAACCAAAAATATAAAAAA
Done.