Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402112.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5206.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1686
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.22

Warning! 612 characters in sequence are not A, C, G, or T


Found at i:868 original size:174 final size:172

Alignment explanation


    Indices: 501--868  Score: 407
    Period size: 174  Copynumber: 2.1  Consensus size: 172

        491 NNNNNNNNNN

                   *                                              *          
        501 ACCCATTGCTTCAAAAGCCTTATTCATCACTTTAAATAGTTTTATAATCTCAAAGTTGATTTTAA
          1 ACCCATTCCTTCAAAAGCCTTATTCATCACTTTAAATAGTTTTATAATCTCAAAATTGATTTTAA

                                  *                      **                  
        566 GTTCAAGTTTTTTTGCTTTTCTGGTTAAAACATACTATAATTGAATGTCTACCCCAAGAAACACA
         66 GTTCAAGTTTTTTTGCTTTTCTAGTTAAAACATACTATAATTGAACATCTACCCCAAGAAACACA

              *       *   *           * **********    
        631 AAGAAGAGAATATTTATTGGCAAGAAGANNNNNNNNNNAGCC
        131 AAAAAGAGAACATTCATTGGCAAGAAAAGTCCATTTATAGCC

                          *               *       *                          
        673 ACCCATTCCTTCAAGAGCCTTATT-ACTCAGTTTAAATGGTTTTATTAATCTCAAAATTGATTTT
          1 ACCCATTCCTTCAAAAGCCTTATTCA-TCACTTTAAATAGTTTTA-TAATCTCAAAATTGATTTT

                               *              *   *                          
        737 AAGTTC-AGTTCTTTTTTGTTTTTCTAGTTAAAATATATTATAATTGAACATCTACCCCAAGAAA
         64 AAGTTCAAG-T-TTTTTTGCTTTTCTAGTTAAAACATACTATAATTGAACATCTACCCCAAGAAA

              *          *                              * 
        801 CATAAAAAAGAGAGCATTCATTGGCAAGAAAAGTCCATTTATAGTC
        127 CACAAAAAAGAGAACATTCATTGGCAAGAAAAGTCCATTTATAGCC

             *      *  *          
        847 ATCCATTCTTTTAAAAGCCTTA
          1 ACCCATTCCTTCAAAAGCCTTA

        869 NNNNNNNNNN


Statistics
Matches: 160,  Mismatches: 32, Indels: 6
        0.81            0.16        0.03

Matches are distributed among these distances:
 171    1  0.01
 172   40  0.25
 173   25  0.16
 174   94  0.59

ACGTcount: A:0.34, C:0.16, G:0.11, T:0.35


Consensus pattern (172 bp):   
ACCCATTCCTTCAAAAGCCTTATTCATCACTTTAAATAGTTTTATAATCTCAAAATTGATTTTAA
GTTCAAGTTTTTTTGCTTTTCTAGTTAAAACATACTATAATTGAACATCTACCCCAAGAAACACA
AAAAAGAGAACATTCATTGGCAAGAAAAGTCCATTTATAGCC
Done.