Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402120.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5213.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1903
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.26

Warning! 528 characters in sequence are not A, C, G, or T


Found at i:1236 original size:171 final size:170

Alignment explanation


    Indices: 812--1305  Score: 501
    Period size: 172  Copynumber: 2.9  Consensus size: 170

        802 NNNNNNNNNN

                     *                       ** *         *       *          
        812 TGGTTAAAGTAGACTATAATTGAATGTCTACCTTGATAAACGTAAATAAAAAGGTATTCATTGGC
          1 TGGTTAAA-CAGACTATAATTGAATGTCTACCTAAAGAAACGTAAAGAAAAA-GCATTCATTGGC

                            *  *            *      *                         
        877 AAGAAAAGTCCATTTAAAGTCACCCATACCTTTAAAAGCCTTATTACTCACTTTAAATGTTTTTA
         64 AAGAAAAGTCCATTTATAGCCACCCATACCTTCAAAAGCATTATTACTCACTTTAAATGTTTTTA

                         *          *                 
        942 TAATCTCAAAATTTATGTAAACTTGAATTCTTTGTACTTTTT
        129 TAATCTCAAAATTGATGTAAACTTCAATTCTTTGTACTTTTT

                      *     *              **        * *                    *
        984 TGGTTAAAACGGACTAGAATTGAATGTCTACGAAAAGAAACATGAAGAAAGAAGCATTCATTGGT
          1 TGGTT-AAACAGACTATAATTGAATGTCTACCTAAAGAAACGTAAAGAAA-AAGCATTCATTGGC

                                    *        *                     *         
       1049 AAGAAAAGTCCATTTATAGCCACCGATACCTTCGAAAGCATTATTACT-AGCTTTCAATAG-TTT
         64 AAGAAAAGTCCATTTATAGCCACCCATACCTTCAAAAGCATTATTACTCA-CTTTAAAT-GTTTT

             *    *  **       * *  *       *   *         
       1112 TGTAATGTCCTAATTGATTTGAAGTTCAATTGTTTTTA-TATTTT
        127 TATAATCTCAAAATTGATGTAAACTTCAATTCTTTGTACT-TTTT

                                      *     *                   *         *  
       1156 TGGTTAAACAGACTATAATTGAATGTTTACCTCAAGAAACGTAAAGAAAAATACATTCATTGACA
          1 TGGTTAAACAGACTATAATTGAATGTCTACCTAAAGAAACGTAAAGAAAAA-GCATTCATTGGCA

                    *         *   *   *            *                   *     
       1221 AGAAAAGTACATTTATAGTCACTCATTCCTTC-AAAGCCCTTATTACTCACTTTAAATGGTTTTA
         65 AGAAAAGTCCATTTATAGCCACCCATACCTTCAAAAG-CATTATTACTCACTTTAAATGTTTTTA

                            *    
       1285 TAATCTCAAAATTGATTTAAA
        129 TAATCTCAAAATTGATGTAAA

       1306 TTTGANNNNN


Statistics
Matches: 259,  Mismatches: 54, Indels: 19
        0.78            0.16        0.06

Matches are distributed among these distances:
 170    7  0.03
 171  112  0.43
 172  134  0.52
 173    6  0.02

ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35


Consensus pattern (170 bp):   
TGGTTAAACAGACTATAATTGAATGTCTACCTAAAGAAACGTAAAGAAAAAGCATTCATTGGCAA
GAAAAGTCCATTTATAGCCACCCATACCTTCAAAAGCATTATTACTCACTTTAAATGTTTTTATA
ATCTCAAAATTGATGTAAACTTCAATTCTTTGTACTTTTT
Done.