Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402129.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5221.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3236
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31


Found at i:442 original size:5 final size:5

Alignment explanation


    Indices: 434--466  Score: 57
    Period size: 5  Copynumber: 6.6  Consensus size: 5

        424 GAGGGGAATG

                          *                        
        434 TTCTA TTCTA TTATA TTCTA TTCTA TTCTA TTC
          1 TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TTC

        467 CCTACAAATT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   5   26  1.00

ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61


Consensus pattern (5 bp):   
TTCTA

Done.