Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402133.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5225.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 689

Length: 1149
ACGTcount: A:0.29, C:0.11, G:0.10, T:0.28

Warning! 240 characters in sequence are not A, C, G, or T


Found at i:474 original size:169 final size:171

Alignment explanation


    Indices: 236--674  Score: 483
    Period size: 171  Copynumber: 2.6  Consensus size: 171

        226 NNNNNNCTTG

                       *                ** *     *                *       *  
        236 AGAAACATGAAGAAAAAAGCATTCATTGATAGGAAAAGTCCATTTATAGTCACCTATACCTTCAA
          1 AGAAACATGAAAAAAAAAGCATTCATTGGCAAGAAAAATCCATTTATAGTCACCAATACCTTTAA

                            *            *                                  *
        301 AAGCCTTATTACTCACGTTAAATAGTTTTGTAATGCCATAA-TTGATTTTAAGTTG-ATT-TTTT
         66 AAGCCTTATTACTCACTTTAAATAGTTTTATAATGCCA-AAGTTGA-TTTAAGTTGAATTCTTTG

              * *                  *                  *
        363 TATATTTTTGGTT-AAACAAACTCTAATTGAATGACTACCTTG
        129 TACAGTTTTGGTTAAAACAAACTATAATTGAATGACTACCTTC

                                    **         *  * **             *  ***    
        405 AGAAACAT-AAAAAAAAAGGCATTTGTTGGCAAGAGAAGTGTATTTATAGTCACCCATTTTTTTA
          1 AGAAACATGAAAAAAAAA-GCATTCATTGGCAAGAAAAATCCATTTATAGTCACCAATACCTTTA

                         *                     **              *             
        469 AAAGCCTTATTACGCACTTTAAATAGTTTTATAATTTCAAAGTTGATTTAATTTGAATTCTTTGT
         65 AAAGCCTTATTACTCACTTTAAATAGTTTTATAATGCCAAAGTTGATTTAAGTTGAATTCTTTGT

                              *     *        *        
        534 ACAGTTTTGGTTAAAACAGACTATGATTGAATGTCTACCTTC
        130 ACAGTTTTGGTTAAAACAAACTATAATTGAATGACTACCTTC

                     * *       *                                 *           
        576 AGAAACATGTAGAAAAAAGTATTCATTGGCAAGAAAAATCCATTTATAGTCACTAATACCTTTAA
          1 AGAAACATGAAAAAAAAAGCATTCATTGGCAAGAAAAATCCATTTATAGTCACCAATACCTTTAA

                          *        *          
        641 AAGCCTTATTACTCGCTTTAAATGGTTTTATAAT
         66 AAGCCTTATTACTCACTTTAAATAGTTTTATAAT

        675 CTCAAAATTG


Statistics
Matches: 219,  Mismatches: 45, Indels: 10
        0.80            0.16        0.04

Matches are distributed among these distances:
 168   18  0.08
 169   82  0.37
 170   14  0.06
 171   98  0.45
 172    7  0.03

ACGTcount: A:0.37, C:0.13, G:0.13, T:0.36


Consensus pattern (171 bp):   
AGAAACATGAAAAAAAAAGCATTCATTGGCAAGAAAAATCCATTTATAGTCACCAATACCTTTAA
AAGCCTTATTACTCACTTTAAATAGTTTTATAATGCCAAAGTTGATTTAAGTTGAATTCTTTGTA
CAGTTTTGGTTAAAACAAACTATAATTGAATGACTACCTTC
Done.