Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402137.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5228.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2154
ACGTcount: A:0.27, C:0.10, G:0.09, T:0.28

Warning! 558 characters in sequence are not A, C, G, or T


Found at i:895 original size:170 final size:169

Alignment explanation


    Indices: 510--932  Score: 395
    Period size: 170  Copynumber: 2.5  Consensus size: 169

        500 TGTTTTACAT

                                         *  *   *      *             *   *   
        510 TTTTTGTTAAAACAGACTATAATTAAATGCTTGCCTTGAGAAAGATATAAAAAAAGCTATTCATT
          1 TTTTTGTTAAAACAGACTATAATTAAATGATTACCTCGAGAAACATA-AAAAAAAGCCATTTATT

                             *              *                               *
        575 GAGAAGAAAAGTCCATTTATAGTCACCCATTTTTTCAAAAGGCTTATTACTCAGTTTAAATGGTT
         65 GAGAAGAAAAGTCCATTCATAGTCACCCATTTCTTCAAAAGGCTTATTACTCAGTTTAAATGGTA

                      **********                    
        640 TTATAATCTCNNNNNNNNNNTTAAGTTGAATTTTTTTATA
        130 TTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTATA

                  *                *       *  *   *         *                
        680 TTTTTTCTTAAAACAGACTATAAATAAATGACTATCTCAAGAAACATGCAAAAAAAGCCATTTAT
          1 -TTTTTGTTAAAACAGACTATAATTAAATGATTACCTCGAGAAACAT-AAAAAAAAGCCATTTAT

                                                                             
        745 TGAGAAGAAAAGTCCATTCATAGTCA-CCATTTCTTCAAAAGGCTTATTACTC-GCTTTAAATGG
         64 TGAGAAGAAAAGTCCATTCATAGTCACCCATTTCTTCAAAAGGCTTATTACTCAG-TTTAAATGG

                                         **********   
        808 TATTATAATCTCATAATTGATTTTAAGTTNNNNNNNNNNATA
        128 TATTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTATA

                           *         *    *                                  
        850 TTTTTGATTAAAACATACTATAATTGAATGTTTACCTCGAGAAACATAAAGAAACAAG-CATTCT
          1 TTTTTG-TTAAAACAGACTATAATTAAATGATTACCTCGAGAAACATAAA-AAA-AAGCCATT-T

                 *              
        914 -TTGACAAGAAAAGTCCATT
         62 ATTGAGAAGAAAAGTCCATT

        933 TAGAGCCAGT


Statistics
Matches: 201,  Mismatches: 45, Indels: 13
        0.78            0.17        0.05

Matches are distributed among these distances:
 169    8  0.04
 170  113  0.56
 171   80  0.40

ACGTcount: A:0.37, C:0.13, G:0.11, T:0.34


Consensus pattern (169 bp):   
TTTTTGTTAAAACAGACTATAATTAAATGATTACCTCGAGAAACATAAAAAAAAGCCATTTATTG
AGAAGAAAAGTCCATTCATAGTCACCCATTTCTTCAAAAGGCTTATTACTCAGTTTAAATGGTAT
TATAATCTCATAATTGATTTTAAGTTGAATTTTTTTATA
Done.