Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402138.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5229.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 906

Length: 1511
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.27

Warning! 341 characters in sequence are not A, C, G, or T


Found at i:601 original size:169 final size:160

Alignment explanation


    Indices: 415--720  Score: 314
    Period size: 170  Copynumber: 1.9  Consensus size: 160

        405 GCTTTTGAAG

                                                                  *          
        415 GAATGAGAGACTATAAATGAACTTTTCTTCC-AATAAATAGGC-TTTACTATATGATTTCC-AAG
          1 GAATGAGAGACTATAAATGAACTTTTCTTCCAAATAAAT-GGCTTTTACTATA-CATTTCCTAAG

             *             *                *             *      *           
        477 GTAGGCATTCAATTATAGTCTCTTCTAACAAACAATGTAAAAAATTGAACTTAGAA-CGAATTAT
         64 GCAGGCATTCAATTACAGTCTCTTCTAACAAAAAATGTAAAAAATTCAACTTAAAATC-AATTAT

                                                       
        541 GAGATTATAAAGCCATTTAAAGTGAGTAANNNNNNNNNNGAAA
        128 GAGATTATAAAGCCATTTAAAGTGAGTAA----------GAAA

                 *    *        *                   *      *                  
        584 GAATGGGAGATTATAAATGGACTTTTCTTCCAAATAAATTGCTTTTGCTATACATTTCCTAAGGC
          1 GAATGAGAGACTATAAATGAACTTTTCTTCCAAATAAATGGCTTTTACTATACATTTCCTAAGGC

             *               * *  *   *                                    * 
        649 ATGCATTCAATTACAGTTTGTTTTAATAAAAAATGTAAAAAATTCAACTTAAAATCAATTATGTG
         66 AGGCATTCAATTACAGTCTCTTCTAACAAAAAATGTAAAAAATTCAACTTAAAATCAATTATGAG

                   
        714 ATTATAA
        131 ATTATAA

        721 NNNNNNNNNN


Statistics
Matches: 116,  Mismatches: 17, Indels: 7
        0.83            0.12        0.05

Matches are distributed among these distances:
 169   36  0.31
 170   79  0.68
 171    1  0.01

ACGTcount: A:0.39, C:0.12, G:0.13, T:0.33


Consensus pattern (160 bp):   
GAATGAGAGACTATAAATGAACTTTTCTTCCAAATAAATGGCTTTTACTATACATTTCCTAAGGC
AGGCATTCAATTACAGTCTCTTCTAACAAAAAATGTAAAAAATTCAACTTAAAATCAATTATGAG
ATTATAAAGCCATTTAAAGTGAGTAAGAAA
Done.