Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402147.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5238.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3639
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.30


Found at i:2943 original size:25 final size:25

Alignment explanation


    Indices: 2885--2944  Score: 66
    Period size: 25  Copynumber: 2.4  Consensus size: 25

       2875 GTGGTCACAA

                          **   *     
       2885 CCACGTATATCAACTTGTGGCCTAG
          1 CCACGTATATCAACCCGTGACCTAG

                *                  * 
       2910 CCACATATATCAACCCGTGACCTTG
          1 CCACGTATATCAACCCGTGACCTAG

            *         
       2935 TCACGTATAT
          1 CCACGTATAT

       2945 ATCACAAACC


Statistics
Matches: 28,  Mismatches: 7, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  25   28  1.00

ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28


Consensus pattern (25 bp):   
CCACGTATATCAACCCGTGACCTAG
Done.