Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402149.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_524.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3730
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.15

Warning! 2285 characters in sequence are not A, C, G, or T


Found at i:2858 original size:21 final size:21

Alignment explanation


    Indices: 2833--2874  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2823 GAAGGAAAAA

                                 
       2833 GCATTAATTGGCAAGAAAAGT
          1 GCATTAATTGGCAAGAAAAGT

                                 
       2854 GCATTAATTGGCAAGAAAAGT
          1 GCATTAATTGGCAAGAAAAGT

       2875 CTATTTATAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.43, C:0.10, G:0.24, T:0.24


Consensus pattern (21 bp):   
GCATTAATTGGCAAGAAAAGT
Done.