Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402162.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5251.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2769
ACGTcount: A:0.25, C:0.08, G:0.09, T:0.23

Warning! 964 characters in sequence are not A, C, G, or T


Found at i:2280 original size:16 final size:18

Alignment explanation


    Indices: 2255--2294  Score: 57
    Period size: 16  Copynumber: 2.3  Consensus size: 18

       2245 ATGAAAAATG

                              
       2255 TAAAAACAATTC-AA-CT
          1 TAAAAACAATTCTAAGCT

                 *            
       2271 TAAAATCAATTCTAAGCT
          1 TAAAAACAATTCTAAGCT

                  
       2289 TAAAAA
          1 TAAAAA

       2295 ACCATTTAAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  16   11  0.55
  17    2  0.10
  18    7  0.35

ACGTcount: A:0.55, C:0.15, G:0.03, T:0.28


Consensus pattern (18 bp):   
TAAAAACAATTCTAAGCT

Done.