Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397744.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1041.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17941

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93--628
171
3.1
169
84
3
639
36
13
11
36
1.81
5--628
170
3.7
169
81
4
644
35
13
10
37
1.80
760--1077
170
1.9
160
81
6
295
35
13
11
36
1.81
1138--2200
170
6.2
169
73
6
645
34
11
12
38
1.80
2294--4120
171
10.7
169
73
5
845
34
13
11
37
1.81
4304--4641
171
2.0
170
84
2
437
37
10
12
38
1.79
4708--5287
171
3.4
170
78
3
488
34
12
10
38
1.78
5810--5846
18
2.0
20
89
10
60
48
5
13
32
1.65
5775--6872
170
6.5
168
70
7
547
35
12
12
35
1.81
7093--7947
171
5.0
173
76
5
679
34
13
12
36
1.83
7402--8051
342
1.9
343
80
5
749
36
12
11
36
1.79
8022--8074
22
2.4
22
96
0
97
50
5
15
28
1.66
8426--9542
170
6.5
169
72
5
623
34
11
12
37
1.80
8535--9661
170
6.6
169
73
6
617
33
12
11
37
1.80
10019--11486
171
8.6
171
78
4
1295
35
13
12
38
1.81
12199--12578
169
2.2
171
76
2
388
34
13
12
36
1.82
13928--15228
171
7.6
169
72
4
719
36
11
11
35
1.79
13928--14712
340
2.3
340
79
3
801
38
11
11
36
1.79
15332--15924
171
3.5
169
76
5
554
33
12
12
40
1.80
17206--17941
171
4.3
170
77
3
534
33
14
11
37
1.81
17118--17941
170
4.8
170
76
4
712
34
13
11
36
1.82

Tables:   1

The End!