Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402170.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5259.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 808

Length: 1347
ACGTcount: A:0.12, C:0.06, G:0.07, T:0.13

Warning! 835 characters in sequence are not A, C, G, or T


Found at i:77 original size:18 final size:18

Alignment explanation


    Indices: 54--89  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

         44 TCAAAGTGAT

                              
         54 AAAATTGATCCAAAAGCA
          1 AAAATTGATCCAAAAGCA

                              
         72 AAAATTGATCCAAAAGCA
          1 AAAATTGATCCAAAAGCA

         90 TAGATCAATA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.56, C:0.17, G:0.11, T:0.17


Consensus pattern (18 bp):   
AAAATTGATCCAAAAGCA
Done.