Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402178.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5268.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2371
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.31

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:193 original size:29 final size:29

Alignment explanation


    Indices: 146--205  Score: 104
    Period size: 29  Copynumber: 2.1  Consensus size: 29

        136 AAAATGCACC

                                         
        146 AAAGATGTAATGACTCTAATTACCAAGTT
          1 AAAGATGTAATGACTCTAATTACCAAGTT

                                          
        175 AAAGATGTAATGA-TGCTAATTACCAAGTT
          1 AAAGATGTAATGACT-CTAATTACCAAGTT

              
        204 AA
          1 AA

        206 TTTTACATAA


Statistics
Matches: 30,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
  28    1  0.03
  29   29  0.97

ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30


Consensus pattern (29 bp):   
AAAGATGTAATGACTCTAATTACCAAGTT

Found at i:372 original size:22 final size:22

Alignment explanation


    Indices: 346--398  Score: 61
    Period size: 22  Copynumber: 2.4  Consensus size: 22

        336 AGTTAAAAGA

                      * *       * 
        346 TTTAATTAGTTCTAAAATAATT
          1 TTTAATTAGTACCAAAATAAGT

                    *       *     
        368 TTTAATTACTACCAAATTAAGT
          1 TTTAATTAGTACCAAAATAAGT

                     
        390 TTTAATTAG
          1 TTTAATTAG

        399 ATTAAATTAT


Statistics
Matches: 25,  Mismatches: 6, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.40, C:0.08, G:0.06, T:0.47


Consensus pattern (22 bp):   
TTTAATTAGTACCAAAATAAGT
Done.