Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402181.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5270.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 703

Length: 1172
ACGTcount: A:0.25, C:0.11, G:0.08, T:0.27

Warning! 334 characters in sequence are not A, C, G, or T


Found at i:818 original size:170 final size:171

Alignment explanation


    Indices: 505--959  Score: 447
    Period size: 170  Copynumber: 2.7  Consensus size: 171

        495 NNNNNNNNNN

                                     *                  *                  * 
        505 TAATTGAATGTCTACCTTAAGAAACTTGAAGAAAAAGGCATTCATTGGCAAGAAAAGTCAATTTA
          1 TAATTGAATGTCTACCTTAAGAAACGTGAAGAAAAAGGCATTCACTGGCAAGAAAAGTCAATTAA

                         *        *  *     * *                  *            
        570 TAGTCATCCATTCTTTCAAAAGTCTTATTACTCGCTTTAAATGGGTTTATAATCTCAAAATTACT
         66 TAGTCATCCATTCATTCAAAAGCCTCATTACACACTTTAAATGGGTTTATAACCTCAAAATTACT

                  *                                  
        635 CTTAAGTTGAATTTTTTTACATTTTTGGTTAAAATATGTTA
        131 CTTAAGCTGAATTTTTTTACATTTTTGGTTAAAATATGTTA

                       *                                            *   *    
        676 TAATTGAATGTTTACC-TAATGAAACGTGAAG-AAAAGGCATTCACTGGCAAGAAAGGTCCATTA
          1 TAATTGAATGTCTACCTTAA-GAAACGTGAAGAAAAAGGCATTCACTGGCAAGAAAAGTCAATTA

                                                     *                * *    
        739 ATAGTCA-CCTATTCATTCAAAAGCCTCATTACACACTTTAGAT-GGTTTGATAACCTTATAATT
         65 ATAGTCATCC-ATTCATTCAAAAGCCTCATTACACACTTTAAATGGGTTT-ATAACCTCAAAATT

                *                  *      *  *     **     
        802 GA-TTTTAAGCTGAATTTTTTT-TATTTTTTGTCAAAA-CCGATTA
        128 -ACTCTTAAGCTGAATTTTTTTACATTTTTGGTTAAAATATG-TTA

                     *       *    * **          **      *           *  *   * 
        845 TAATTGAATATCTACCTCAAGAGATATGAAGAAAAACACATTCATTGGCAAGAAAATTCTATTTA
          1 TAATTGAATGTCTACCTTAAGAAACGTGAAGAAAAAGGCATTCACTGGCAAGAAAAGTCAATTAA

              *   *      *   *       *     * *          *     
        910 TAATCACCCATTCCTTCGAAAGCCTTATTACTCTCTTTAAATGGTTTTAT
         66 TAGTCATCCATTCATTCAAAAGCCTCATTACACACTTTAAATGGGTTTAT

        960 NNNNNNNNNN


Statistics
Matches: 232,  Mismatches: 43, Indels: 19
        0.79            0.15        0.06

Matches are distributed among these distances:
 168    1  0.00
 169   44  0.19
 170  155  0.67
 171   32  0.14

ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37


Consensus pattern (171 bp):   
TAATTGAATGTCTACCTTAAGAAACGTGAAGAAAAAGGCATTCACTGGCAAGAAAAGTCAATTAA
TAGTCATCCATTCATTCAAAAGCCTCATTACACACTTTAAATGGGTTTATAACCTCAAAATTACT
CTTAAGCTGAATTTTTTTACATTTTTGGTTAAAATATGTTA
Done.