Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402188.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5277.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5473
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34


Found at i:1432 original size:17 final size:17

Alignment explanation


    Indices: 1412--1445  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1402 GATATTTGAA

                             
       1412 AATTTTGAAAATGGTGG
          1 AATTTTGAAAATGGTGG

                             
       1429 AATTTTGAAAATGGTGG
          1 AATTTTGAAAATGGTGG

       1446 GAGATTGTTG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35


Consensus pattern (17 bp):   
AATTTTGAAAATGGTGG

Found at i:4670 original size:2 final size:2

Alignment explanation


    Indices: 4663--4690  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

       4653 TTATGCACTA

                                                     
       4663 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       4691 CTCTTTTATT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.