Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402200.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5289.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1451
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.31

Warning! 282 characters in sequence are not A, C, G, or T


Found at i:1068 original size:172 final size:170

Alignment explanation


    Indices: 740--1080  Score: 373
    Period size: 172  Copynumber: 2.0  Consensus size: 170

        730 NNNNNNNNNN

                                       *  *                    *  ** *       
        740 GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTATAGTTTTATTTAATTAGACTATAA
          1 GTTTTATAATCTCATAATTGATTTTAAATTAAATTTTTTTATAGTTTTATTAAAACAAACTATAA

              *                              **          *   *            *  
        805 TTGAATGTCTACCTTCAGAAACATGAAGAAAAAGGTATTCATTGGTAAGGAAAGTCCATTTATAG
         66 TTAAATGTCTACCTTCAGAAACATGAAGAAAAAACTATTCATTGGGAAGAAAAGTCCATTTACAG

                         *     *         * *        
        870 TCACCCATTCCTTTAAAAGTCTTATTACTTGTTTTAAATA
        131 TCACCCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATA

                   *                                     *                   
        910 GTTTTATCATCTCATAATTGATTTTAAATTAAAGTTTTTTTATATTTTTTATTAAAACAAACTAT
          1 GTTTTATAATCTCATAATTGATTTTAAATTAAA-TTTTTTTATA-GTTTTATTAAAACAAACTAT

                                     ***  *                             *    
        975 AATTAAATG-CTTGA-C-TCTAGAATTGTGTAGAAAAAACTATTCATTGGGAAGAAAAGTTCATT
         64 AATTAAATGTC-T-ACCTTC-AGAAACATGAAGAAAAAACTATTCATTGGGAAGAAAAGTCCATT

                  **  *   *                             
       1037 TACAGTTGCCTATTTCTTCAAAAGCCTTATTACTCGCTTTAAAT
        126 TACAGTCACCCATTCCTTCAAAAGCCTTATTACTCGCTTTAAAT

       1081 GNNNNNNNNN


Statistics
Matches: 139,  Mismatches: 27, Indels: 8
        0.80            0.16        0.05

Matches are distributed among these distances:
 170   30  0.22
 171   13  0.09
 172   95  0.68
 173    1  0.01

ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42


Consensus pattern (170 bp):   
GTTTTATAATCTCATAATTGATTTTAAATTAAATTTTTTTATAGTTTTATTAAAACAAACTATAA
TTAAATGTCTACCTTCAGAAACATGAAGAAAAAACTATTCATTGGGAAGAAAAGTCCATTTACAG
TCACCCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATA
Done.