Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402202.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5290.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 762

Length: 1270
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.29


Found at i:41 original size:27 final size:27

Alignment explanation


    Indices: 6--57  Score: 95
    Period size: 27  Copynumber: 1.9  Consensus size: 27

          1 AAAAA

                *                      
          6 TAATTATATGTTTTAAATCTTGTAAAT
          1 TAATAATATGTTTTAAATCTTGTAAAT

                                     
         33 TAATAATATGTTTTAAATCTTGTAA
          1 TAATAATATGTTTTAAATCTTGTAA

         58 CATAAGTAGG


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   24  1.00

ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50


Consensus pattern (27 bp):   
TAATAATATGTTTTAAATCTTGTAAAT

Found at i:886 original size:85 final size:85

Alignment explanation


    Indices: 736--941  Score: 326
    Period size: 85  Copynumber: 2.4  Consensus size: 85

        726 TTAATCTCAA

                       *                                                     
        736 ACACCTTAACCTTAAATTAAATGAGATTAAC-AAAAAAATTAAGAGAGAGAAAGAAAAGATTAAC
          1 ACACCTTAACCCTAAATTAAATGAGATTAACAAAAAAAATTAAGAGAGAGAAAGAAAAGATTAAC

                       *        
        800 AATCGATAAAAGGGAGAAAG
         66 AATCGATAAAACGGAGAAAG

                *                                                            
        820 ACACTTTAACCCTAAATTAAATGAGATTAACAAAAAAAATTAAGAGAGAGATAA-AAAAGATTAA
          1 ACACCTTAACCCTAAATTAAATGAGATTAACAAAAAAAATTAAGAGAGAGA-AAGAAAAGATTAA

                                 
        884 CAATCGATAAAACGGAGAAAG
         65 CAATCGATAAAACGGAGAAAG

             *    *        *              *      
        905 AAACCTGAACCCTAAGTTAAATGAGATTAATAAAAAA
          1 ACACCTTAACCCTAAATTAAATGAGATTAACAAAAAA

        942 GATAAGGGGA


Statistics
Matches: 112,  Mismatches: 8, Indels: 3
        0.91            0.07        0.02

Matches are distributed among these distances:
  84   29  0.26
  85   81  0.72
  86    2  0.02

ACGTcount: A:0.56, C:0.11, G:0.15, T:0.19


Consensus pattern (85 bp):   
ACACCTTAACCCTAAATTAAATGAGATTAACAAAAAAAATTAAGAGAGAGAAAGAAAAGATTAAC
AATCGATAAAACGGAGAAAG
Done.