Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402209.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5297.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 998

Length: 1664
ACGTcount: A:0.21, C:0.07, G:0.06, T:0.21

Warning! 747 characters in sequence are not A, C, G, or T


Found at i:1501 original size:170 final size:170

Alignment explanation


    Indices: 1190--1662  Score: 459
    Period size: 170  Copynumber: 2.8  Consensus size: 170

       1180 CAGTTTTGAA

                              *                          *    *              
       1190 TTGAACTTTTTTATATTTATTATTAAAACAGATTATAATT-ATATATTTACCTCGAGAAACGTGA
          1 TTGAA-TTTTTTATATTTTTTATTAAAACAGATTATAATTGA-ATGTTTAGCTCGAGAAACGTGA

             *            ** *                          *                ****
       1254 AAAAAAAGATATCCAATAGCAAGAAAAGTCCATTTATAGTCACCGATACCTTCAAAAGCCTNNNN
         64 AGAAAAAGATATCCGTTGGCAAGAAAAGTCCATTTATAGTCACCCATACCTTCAAAAGCCTTATT

            ******                                    
       1319 NNNNNNTTTAAATGATTTTATAATGTCATAATTAATTTTAAT
        129 ACTCGCTTTAAATGATTTTATAATGTCATAATTAATTTTAAT

              *                       *                       *              
       1361 TTTAATTTTATTAT-TTTTTTATTAACACAGATTATAATTGAATGTTTAGTTCGAGAAACGTGAA
          1 TTGAATTTT-TTATATTTTTTATTAAAACAGATTATAATTGAATGTTTAGCTCGAGAAACGTGAA

                                        **        *    *              *      
       1425 GAAAAAGATATCCGTTGGCAAGAAAAGTTTATTTATAGCCACCTATACCTTCAAAAGCTTTATTA
         65 GAAAAAGATATCCGTTGGCAAGAAAAGTCCATTTATAGTCACCCATACCTTCAAAAGCCTTATTA

                              **********    *        
       1490 CTCGCTTTAAATGATTTTNNNNNNNNNNAATTGATTTTAAT
        130 CTCGCTTTAAATGATTTTATAATGTCATAATTAATTTTAAT

                            *           *                 *       *      * * 
       1531 TTGAATTTCTTTATATCTTTTATTAAAATAGATTATAATTGAATGTCT-GCCTCTAGAAACATAA
          1 TTGAATTT-TTTATATTTTTTATTAAAACAGATTATAATTGAATGTTTAG-CTCGAGAAACGTGA

                   *                                       *                 
       1595 AGAAAAATATATCCGTTGGCAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAA-CCTTAT
         64 AGAAAAAGATATCCGTTGGCAAGAAAAGTCCATTTATAGTCACCCATACCTTC-AAAAGCCTTAT

                
       1659 TACT
        128 TACT

       1663 TG


Statistics
Matches: 244,  Mismatches: 52, Indels: 12
        0.79            0.17        0.04

Matches are distributed among these distances:
 170  135  0.55
 171  105  0.43
 172    4  0.02

ACGTcount: A:0.36, C:0.13, G:0.11, T:0.37


Consensus pattern (170 bp):   
TTGAATTTTTTATATTTTTTATTAAAACAGATTATAATTGAATGTTTAGCTCGAGAAACGTGAAG
AAAAAGATATCCGTTGGCAAGAAAAGTCCATTTATAGTCACCCATACCTTCAAAAGCCTTATTAC
TCGCTTTAAATGATTTTATAATGTCATAATTAATTTTAAT
Done.