Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402214.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5300.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2122
ACGTcount: A:0.24, C:0.09, G:0.07, T:0.25

Warning! 713 characters in sequence are not A, C, G, or T


Found at i:665 original size:171 final size:171

Alignment explanation


    Indices: 285--665  Score: 372
    Period size: 171  Copynumber: 2.2  Consensus size: 171

        275 NNNNNNNNNG

                     * *                     *               *               
        285 CTTCAAAAGTCATATTACTCACTTCAAATGGTTGTATAATCTCATAATTTATTTTAAGTTGAATA
          1 CTTCAAAAGCCTTATTACTCACTTCAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATA

                    *            *  * * *                             *      
        350 TTTTTACATTTTTCATTAAAATAGGCTATAACTGAATGTTAACCCTAAGAAATGTGAAGGAAAAA
         66 TTTTTACACTTTTCATTAAAACAGACAAGAACTGAATGTTAACCCTAAGAAATGTGAAAGAAAAA

                    **            *  *               
        415 GCATTCATTGGCAAGAAAAGTCTATTTATAACCTCTCATTC
        131 GCATTCATCAGCAAGAAAAGTCCATCTATAACCTCTCATTC

               *                  **********           *                    *
        456 CTTTAAAAGCCTTATTACTCACNNNNNNNNNNTTTATAATCTCGTAATTGATTTTAAGTTGAATT
          1 CTTCAAAAGCCTTATTACTCACTTCAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATA

                  *      *                 *        *  *   *                 
        521 TTTTTATACTTTTGATTAAAACAGACAAGAATTGAATGTTTA-TCTCGAGAAATGTGAAAGAAAA
         66 TTTTTACACTTTTCATTAAAACAGACAAGAACTGAATGTTAACCCT-AAGAAATGTGAAAGAAAA

              *        *                    *           
        585 AGTATTCATCATCAAGAAAAGTCCATCTATAGTCAC-CT-ATTC
        130 AGCATTCATCAGCAAGAAAAGTCCATCTATA-AC-CTCTCATTC

                                 *  *              
        627 CTTCAAAAGCCTTATTACTCAGTTTAAATGGTTTTATAA
          1 CTTCAAAAGCCTTATTACTCACTTCAAATGGTTTTATAA

        666 NNNNNNNNNN


Statistics
Matches: 159,  Mismatches: 48, Indels: 6
        0.75            0.23        0.03

Matches are distributed among these distances:
 170    2  0.01
 171  153  0.96
 172    3  0.02
 173    1  0.01

ACGTcount: A:0.35, C:0.14, G:0.11, T:0.36


Consensus pattern (171 bp):   
CTTCAAAAGCCTTATTACTCACTTCAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATA
TTTTTACACTTTTCATTAAAACAGACAAGAACTGAATGTTAACCCTAAGAAATGTGAAAGAAAAA
GCATTCATCAGCAAGAAAAGTCCATCTATAACCTCTCATTC
Done.