Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402238.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5323.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 744

Length: 1241
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.24

Warning! 383 characters in sequence are not A, C, G, or T


Found at i:827 original size:172 final size:170

Alignment explanation


    Indices: 649--1038  Score: 397
    Period size: 171  Copynumber: 2.3  Consensus size: 170

        639 NNNNNNNNNN

                                     *                *       ***    *     **
        649 AATCTCATAATTGATTTTAAGTTGATTTGTTTTTACATTTTTAGTTAAAATGGACTATAATTGGT
          1 AATCTCATAATTGATTTTAAGTTGAATT-TTTTTACATTTTTGGTTAAAACAAACT-GAATTGAA

             *                          **                            *  *   
        714 TGTCTACCCCAAGAAACATAAAGAAAAAGGCATTCATTGACAAAAAAAGTCCATTTATGGTTACC
         64 TATCTACCCCAAGAAACATAAAGAAAAAACCATTCATTGACAAAAAAAGTCCATTTATAGTAACC

                        *    *                 *      
        779 CATTCCTTCAAATGCCTTATTACTCACATTAAATGGTTTT-G
        129 CATTCCTTCAAAAGCCTCATTACTCACATTAAATGATTTTAG

                    *   *  *  *  *           **                              
        820 TAATCTCAAAATGGACTTAAATTTGAATTCTTTGAACATTTTTGGTTAAAACAAACTGAATTGAA
          1 -AATCTCATAATTGATTTTAAGTTGAATT-TTTTTACATTTTTGGTTAAAACAAACTGAATTGAA

                    ***        **                  **  *                     
        885 TATCTACCTTGAGAAACATGGAGAAAAAACCATTCATTGGGAAGAAAAGTCCATTTATAGTAACC
         64 TATCTACCCCAAGAAACATAAAGAAAAAACCATTCATTGACAAAAAAAGTCCATTTATAGTAACC

            *                        * *              
        950 TATTCCTTCAAAAGCCTCATTACTCCCTTTAAATGATTTTAG
        129 CATTCCTTCAAAAGCCTCATTACTCACATTAAATGATTTTAG

                 *                    *                     
        992 AA-CGCCATAATTGATTTTAAGTTGAGTTTTTTTACATTTTTGGTTAA
          1 AATC-TCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAA

       1039 TTGAATGTCT


Statistics
Matches: 172,  Mismatches: 44, Indels: 6
        0.77            0.20        0.03

Matches are distributed among these distances:
 170   18  0.10
 171  110  0.64
 172   44  0.26

ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37


Consensus pattern (170 bp):   
AATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAAACTGAATTGAATA
TCTACCCCAAGAAACATAAAGAAAAAACCATTCATTGACAAAAAAAGTCCATTTATAGTAACCCA
TTCCTTCAAAAGCCTCATTACTCACATTAAATGATTTTAG
Done.