Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402239.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5324.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1316
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.39


Found at i:1051 original size:18 final size:18

Alignment explanation


    Indices: 1038--1071  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1028 TATATAATAT

                              
       1038 TTTAATTAATTATAAAAA
          1 TTTAATTAATTATAAAAA

                *            
       1056 TTTATTTAATTA-AAAA
          1 TTTAATTAATTATAAAA

       1072 TAAAATTATT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    4  0.27
  18   11  0.73

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (18 bp):   
TTTAATTAATTATAAAAA
Done.