Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402245.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_533.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2074
ACGTcount: A:0.19, C:0.06, G:0.07, T:0.17

Warning! 1043 characters in sequence are not A, C, G, or T


Found at i:1589 original size:170 final size:160

Alignment explanation


    Indices: 1286--1626  Score: 325
    Period size: 170  Copynumber: 2.1  Consensus size: 160

       1276 NNNNNNNNNN

                                       *                        *   *        
       1286 AAAA-TCAA-TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGCATTTTAAATGAATGAGT
          1 AAAATTCAACTTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGCATTTCAAAGGAATGAGT

                                                  *       *  **            * 
       1349 GACTATAAATAGACTTTTTTCTCAATGAATAGCTTTTTTTGCACATTTCTTGAGGTAAGCATTTA
         66 GACTATAAATAGACTTTTTTCTCAATGAATAGCTTTTTCTGCACATCTCCCGAGGTAAGCATTCA

                      *       *    *      
       1414 ATTATAGTCTGTTGTAACCAAAACTGTAAA
        131 ATTATAGTCTATTGTAACAAAAAATGTAAA

                                                         *                  *
       1444 AAAATTCAACTTNNNNNNNNNNATGAGATTATAAAACAATTTAAATCGAGTAATAAGGC-TTTCG
          1 AAAATTCAACTT----------ATGAGATTATAAAACAATTTAAAGCGAGTAATAA-GCATTTCA

                               * *                    *            **        
       1508 AAGGAATGAGTGACTATAACTGGACTTTTGTTCTCAATGAATGGC-TTTTCTGCATGTCTCCCGA
         55 AAGGAATGAGTGACTATAAATAGACTTTT-TTCTCAATGAATAGCTTTTTCTGCACATCTCCCGA

                                       *                
       1572 -G-ACAGACATTCAATTATAGTCTATTTTAACAAAAAATGTAAA
        119 GGTA-AG-CATTCAATTATAGTCTATTGTAACAAAAAATGTAAA

                * *      
       1614 AAAACTAAACTTA
          1 AAAATTCAACTTA

       1627 AAATCAATTA


Statistics
Matches: 146,  Mismatches: 21, Indels: 30
        0.74            0.11        0.15

Matches are distributed among these distances:
 158    4  0.03
 159    4  0.03
 160    3  0.02
 168    1  0.01
 169    3  0.02
 170  115  0.79
 171   16  0.11

ACGTcount: A:0.38, C:0.13, G:0.14, T:0.33


Consensus pattern (160 bp):   
AAAATTCAACTTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGCATTTCAAAGGAATGAGT
GACTATAAATAGACTTTTTTCTCAATGAATAGCTTTTTCTGCACATCTCCCGAGGTAAGCATTCA
ATTATAGTCTATTGTAACAAAAAATGTAAA
Done.