Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402251.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5335.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 756

Length: 1261
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.33

Warning! 201 characters in sequence are not A, C, G, or T


Found at i:397 original size:171 final size:171

Alignment explanation


    Indices: 220--665  Score: 479
    Period size: 171  Copynumber: 2.6  Consensus size: 171

        210 NNNNNNNNNN

                                              *       *    *      *        * 
        220 CATTCCTTCAAAAGCCTTTTTACTTGTTTTAAATGGTTTTATGAGCTCATAATTAATTTTAAGCT
          1 CATTCCTTCAAAAGCCTTTTTACTTGTTTTAAATAGTTTTATAAGCTAATAATTGATTTTAAGTT

            *                              *                                 
        285 GAATTTTTTTATATTTTTCATTAAAACAGACTATAATTGAATG-TCTGACTCAAGAAACGTGAAG
         66 AAATTTTTTTATATTTTTCATTAAAACAGACAATAATTGAATGCTC-GACTCAAGAAACGTGAAG

                      *        *                 **     
        349 A-AAAAGCCATTCATTGG-TAAGAAAAGTCCATATATTGTCT-T
        130 AGAAAAG-CAATCATTGGCAAAGAAAA-TCCATATATAATCTCT

                      *              **            **********                
        390 CCATTCCTTCTAAAGCCTTTTTACTCATTTTAAATAGTTNNNNNNNNNNATAATTGATTTTAAGT
          1 -CATTCCTTCAAAAGCCTTTTTACTTGTTTTAAATAGTTTTATAAGCTAATAATTGATTTTAAGT

                 *                 *     *                  *  *             
        455 TAAATATTTTTATATTTTTCATTGAAACAAACAATAATTGAATGCTCGTCTTAAGAAACGTGAAG
         65 TAAATTTTTTTATATTTTTCATTAAAACAGACAATAATTGAATGCTCGACTCAAGAAACGTGAAG

                   *                     * *          
        520 AGAAAAGTAATCATTGGCAAAGAAAATCCGTTTATAATCTCT
        130 AGAAAAGCAATCATTGGCAAAGAAAATCCATATATAATCTCT

                              **      *                 *                    
        562 CATTCCTTCAAAAGCCTTAGTACTTGCTTTAAATAGTTTTATAATCTAATAATTGATTTTAAGTT
          1 CATTCCTTCAAAAGCCTTTTTACTTGTTTTAAATAGTTTTATAAGCTAATAATTGATTTTAAGTT

                                                    
        627 AAACTTTTTTTATATTTTT-ATTTAAAACAGACAATAATT
         66 AAA-TTTTTTTATATTTTTCA-TTAAAACAGACAATAATT

        666 AATAGTTTAC


Statistics
Matches: 220,  Mismatches: 49, Indels: 11
        0.79            0.17        0.04

Matches are distributed among these distances:
 171  175  0.80
 172   45  0.20

ACGTcount: A:0.35, C:0.13, G:0.11, T:0.40


Consensus pattern (171 bp):   
CATTCCTTCAAAAGCCTTTTTACTTGTTTTAAATAGTTTTATAAGCTAATAATTGATTTTAAGTT
AAATTTTTTTATATTTTTCATTAAAACAGACAATAATTGAATGCTCGACTCAAGAAACGTGAAGA
GAAAAGCAATCATTGGCAAAGAAAATCCATATATAATCTCT
Done.