Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402257.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5340.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 740

Length: 1234
ACGTcount: A:0.24, C:0.07, G:0.08, T:0.23

Warning! 477 characters in sequence are not A, C, G, or T


Found at i:193 original size:11 final size:11

Alignment explanation


    Indices: 177--203  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

        167 AAGGAATGAA

                       
        177 AGACTATAAAT
          1 AGACTATAAAT

                       
        188 AGACTATAAAT
          1 AGACTATAAAT

                 
        199 AGACT
          1 AGACT

        204 TTCCTTACTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.52, C:0.11, G:0.11, T:0.26


Consensus pattern (11 bp):   
AGACTATAAAT
Done.